LOCUS SBV53391.1 1300 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Apical junction molecule protein.
ACCESSION BX284606-2113
PROTEIN_ID SBV53391.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ajm-1"
/locus_tag="CELE_C25A11.4"
/standard_name="C25A11.4i"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1C3NSL9"
/db_xref="InterPro:IPR002893"
/db_xref="InterPro:IPR038825"
/db_xref="UniProtKB/Swiss-Prot:A0A1C3NSL9"
/db_xref="WormBase:WBGene00000100"
intron_pos 17:0 (1/17)
intron_pos 40:0 (2/17)
intron_pos 78:0 (3/17)
intron_pos 384:2 (4/17)
intron_pos 445:2 (5/17)
intron_pos 662:2 (6/17)
intron_pos 686:1 (7/17)
intron_pos 744:0 (8/17)
intron_pos 785:0 (9/17)
intron_pos 824:2 (10/17)
intron_pos 965:0 (11/17)
intron_pos 1018:1 (12/17)
intron_pos 1053:2 (13/17)
intron_pos 1093:2 (14/17)
intron_pos 1133:2 (15/17)
intron_pos 1198:0 (16/17)
intron_pos 1243:2 (17/17)
BEGIN
1 MMPTTTSTYH HVETPSDEYY RREVMTRTII TRSTEALSQT PLGRPASPLD RYLPYPTTTT
61 TTSGDGRTRE EKTVDYKVTY HRDIEEQERR IREDQARRQQ EEQDRRDRED NARRILAQRE
121 HQEMERLREQ QNLSERALAE RERADKERLQ QERLLRQQRE KKRREEWDRL ESIRLAEEEA
181 ELARRRALEK ERIDREKAEE ERKTMERLER ERARLERERL EEERRQKEKA ETERIERERR
241 EHERIEIERI ERIKRERIER ERREREEKKA EEDRLLRERL ELERIERERR ELEARERQEL
301 ELQRREAEDR ERQRLEDEAR EMRRREEERR EAELVADVHR QAEERERLRK RQEREEAERL
361 ERIRLEQQKI DMERIDAERR ERERKEEERR EFELIEAARR KKEARDRDRL DEMERERVRE
421 EEERREKERR EQERRIAAEK ERKRRQEEEE EIARLNELQR AAAARQAQRN AELDRQRQRD
481 ELDRKAQELS EREMREKERR DRERANEEAQ LADLLERERH NQLIRENERR EAVERANNRR
541 LEDRRSRDKL DHIVRERSEK EQFELEKRRL LAEKEAMNRK KNHLLSSETL AKLTQPMYYT
601 TREPEVTTKV ERQVIERIDR NVWVEDVPYA PSQSAMGYLD NDENNRDRLY NPNDLNRNGS
661 SRSRYQRAKN EKARRDFYHS SQDSADPVTE RFRKSTDDLT TRSRPEYRGP LLQKFHDSEF
721 RTTALNETDG LPYRRMGPSP YEQPFAKLLE ETERRYAHYN SRASNPSIYQ SSRYYYPERH
781 GQPQHTDNTR AESVVAYERE SRRESPADQA HIRSRSADYL MDRRIREETE VPENQLQKTR
841 VEPHDQSPRE SRISEYEMRF RKSTEKLTVP DWYRENRPQG QTAQTSTYRY GNGVEPMSTT
901 TTTTTVINGT SSHQQAPPPV PPQPIGNIGL PRGMFDRYKD DIEELRRSRS SLHQTGQQET
961 SNRQGSTLSV GGIVDQGHAL PGYTVSEVPN AWNLHTSRTS RVVEVADTFV GTSSHEYGNF
1021 TNRYGGRVTI EEVLDSIFQK VTPTNQRLNF DRSYPQADEL FQGNVDGPGI YTNNYSVMRQ
1081 VLKSPERAEH ILQNEELFVR CTECHRTREL SAARLFFVSC KHCYTYYCSR ECRHNNWPNH
1141 SGRCSFARIN TLCKDVIMKV REDEQAQAFM SKVARDGFSV SGRGSVNIRL SSPQLAQAYV
1201 SNGWRALSAY PNDQLLYYYT VKALIAERKE PSLIALCNRY EPREKFILSV SIIADIEHCP
1261 ETPPPETREL SAVQFSSPRS RYEAIQNQNA PYFSEFAHNV
//