LOCUS SBV53391.1 1300 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Apical junction molecule protein. ACCESSION BX284606-2113 PROTEIN_ID SBV53391.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ajm-1" /locus_tag="CELE_C25A11.4" /standard_name="C25A11.4i" /note="Confirmed by transcript evidence" /db_xref="GOA:A0A1C3NSL9" /db_xref="InterPro:IPR002893" /db_xref="InterPro:IPR038825" /db_xref="UniProtKB/Swiss-Prot:A0A1C3NSL9" /db_xref="WormBase:WBGene00000100" intron_pos 17:0 (1/17) intron_pos 40:0 (2/17) intron_pos 78:0 (3/17) intron_pos 384:2 (4/17) intron_pos 445:2 (5/17) intron_pos 662:2 (6/17) intron_pos 686:1 (7/17) intron_pos 744:0 (8/17) intron_pos 785:0 (9/17) intron_pos 824:2 (10/17) intron_pos 965:0 (11/17) intron_pos 1018:1 (12/17) intron_pos 1053:2 (13/17) intron_pos 1093:2 (14/17) intron_pos 1133:2 (15/17) intron_pos 1198:0 (16/17) intron_pos 1243:2 (17/17) BEGIN 1 MMPTTTSTYH HVETPSDEYY RREVMTRTII TRSTEALSQT PLGRPASPLD RYLPYPTTTT 61 TTSGDGRTRE EKTVDYKVTY HRDIEEQERR IREDQARRQQ EEQDRRDRED NARRILAQRE 121 HQEMERLREQ QNLSERALAE RERADKERLQ QERLLRQQRE KKRREEWDRL ESIRLAEEEA 181 ELARRRALEK ERIDREKAEE ERKTMERLER ERARLERERL EEERRQKEKA ETERIERERR 241 EHERIEIERI ERIKRERIER ERREREEKKA EEDRLLRERL ELERIERERR ELEARERQEL 301 ELQRREAEDR ERQRLEDEAR EMRRREEERR EAELVADVHR QAEERERLRK RQEREEAERL 361 ERIRLEQQKI DMERIDAERR ERERKEEERR EFELIEAARR KKEARDRDRL DEMERERVRE 421 EEERREKERR EQERRIAAEK ERKRRQEEEE EIARLNELQR AAAARQAQRN AELDRQRQRD 481 ELDRKAQELS EREMREKERR DRERANEEAQ LADLLERERH NQLIRENERR EAVERANNRR 541 LEDRRSRDKL DHIVRERSEK EQFELEKRRL LAEKEAMNRK KNHLLSSETL AKLTQPMYYT 601 TREPEVTTKV ERQVIERIDR NVWVEDVPYA PSQSAMGYLD NDENNRDRLY NPNDLNRNGS 661 SRSRYQRAKN EKARRDFYHS SQDSADPVTE RFRKSTDDLT TRSRPEYRGP LLQKFHDSEF 721 RTTALNETDG LPYRRMGPSP YEQPFAKLLE ETERRYAHYN SRASNPSIYQ SSRYYYPERH 781 GQPQHTDNTR AESVVAYERE SRRESPADQA HIRSRSADYL MDRRIREETE VPENQLQKTR 841 VEPHDQSPRE SRISEYEMRF RKSTEKLTVP DWYRENRPQG QTAQTSTYRY GNGVEPMSTT 901 TTTTTVINGT SSHQQAPPPV PPQPIGNIGL PRGMFDRYKD DIEELRRSRS SLHQTGQQET 961 SNRQGSTLSV GGIVDQGHAL PGYTVSEVPN AWNLHTSRTS RVVEVADTFV GTSSHEYGNF 1021 TNRYGGRVTI EEVLDSIFQK VTPTNQRLNF DRSYPQADEL FQGNVDGPGI YTNNYSVMRQ 1081 VLKSPERAEH ILQNEELFVR CTECHRTREL SAARLFFVSC KHCYTYYCSR ECRHNNWPNH 1141 SGRCSFARIN TLCKDVIMKV REDEQAQAFM SKVARDGFSV SGRGSVNIRL SSPQLAQAYV 1201 SNGWRALSAY PNDQLLYYYT VKALIAERKE PSLIALCNRY EPREKFILSV SIIADIEHCP 1261 ETPPPETREL SAVQFSSPRS RYEAIQNQNA PYFSEFAHNV //