LOCUS SBV53381.1 1487 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Apical junction molecule protein.
ACCESSION BX284606-2110
PROTEIN_ID SBV53381.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ajm-1"
/locus_tag="CELE_C25A11.4"
/standard_name="C25A11.4g"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1C3NSL9"
/db_xref="InterPro:IPR002893"
/db_xref="InterPro:IPR038825"
/db_xref="UniProtKB/Swiss-Prot:A0A1C3NSL9"
/db_xref="WormBase:WBGene00000100"
intron_pos 3:2 (1/20)
intron_pos 106:1 (2/20)
intron_pos 146:0 (3/20)
intron_pos 204:0 (4/20)
intron_pos 227:0 (5/20)
intron_pos 265:0 (6/20)
intron_pos 571:2 (7/20)
intron_pos 632:2 (8/20)
intron_pos 849:2 (9/20)
intron_pos 873:1 (10/20)
intron_pos 931:0 (11/20)
intron_pos 972:0 (12/20)
intron_pos 1011:2 (13/20)
intron_pos 1152:0 (14/20)
intron_pos 1205:1 (15/20)
intron_pos 1240:2 (16/20)
intron_pos 1280:2 (17/20)
intron_pos 1320:2 (18/20)
intron_pos 1385:0 (19/20)
intron_pos 1430:2 (20/20)
BEGIN
1 MQKTKDEMDA TSERPRSPLD LPPPPASVVL HPSAPPPPPP PLSSTEVVGN TTTTTTTHYA
61 PKTWNDPSIT TAPKIPVSLL SGAQPLPSVL TQRTTTSSYS APNYSASSMS GVPSDVAPPP
121 PLPIPNQSSS SAASYQHHHA SSISKSISSS REDLLSEHAT SRSTVREIPV HRAPSTAPSH
181 SSVFEYHMMP TTTSTYHHVE TPSDEYYRRE VMTRTIITRS TEALSQTPLG RPASPLDRYL
241 PYPTTTTTTS GDGRTREEKT VDYKVTYHRD IEEQERRIRE DQARRQQEEQ DRRDREDNAR
301 RILAQREHQE MERLREQQNL SERALAERER ADKERLQQER LLRQQREKKR REEWDRLESI
361 RLAEEEAELA RRRALEKERI DREKAEEERK TMERLERERA RLERERLEEE RRQKEKAETE
421 RIERERREHE RIEIERIERI KRERIERERR EREEKKAEED RLLRERLELE RIERERRELE
481 ARERQELELQ RREAEDRERQ RLEDEAREMR RREEERREAE LVADVHRQAE ERERLRKRQE
541 REEAERLERI RLEQQKIDME RIDAERRERE RKEEERREFE LIEAARRKKE ARDRDRLDEM
601 ERERVREEEE RREKERREQE RRIAAEKERK RRQEEEEEIA RLNELQRAAA ARQAQRNAEL
661 DRQRQRDELD RKAQELSERE MREKERRDRE RANEEAQLAD LLERERHNQL IRENERREAV
721 ERANNRRLED RRSRDKLDHI VRERSEKEQF ELEKRRLLAE KEAMNRKKNH LLSSETLAKL
781 TQPMYYTTRE PEVTTKVERQ VIERIDRNVW VEDVPYAPSQ SAMGYLDNDE NNRDRLYNPN
841 DLNRNGSSRS RYQRAKNEKA RRDFYHSSQD SADPVTERFR KSTDDLTTRS RPEYRGPLLQ
901 KFHDSEFRTT ALNETDGLPY RRMGPSPYEQ PFAKLLEETE RRYAHYNSRA SNPSIYQSSR
961 YYYPERHGQP QHTDNTRAES VVAYERESRR ESPADQAHIR SRSADYLMDR RIREETEVPE
1021 NQLQKTRVEP HDQSPRESRI SEYEMRFRKS TEKLTVPDWY RENRPQGQTA QTSTYRYGNG
1081 VEPMSTTTTT TTVINGTSSH QQAPPPVPPQ PIGNIGLPRG MFDRYKDDIE ELRRSRSSLH
1141 QTGQQETSNR QGSTLSVGGI VDQGHALPGY TVSEVPNAWN LHTSRTSRVV EVADTFVGTS
1201 SHEYGNFTNR YGGRVTIEEV LDSIFQKVTP TNQRLNFDRS YPQADELFQG NVDGPGIYTN
1261 NYSVMRQVLK SPERAEHILQ NEELFVRCTE CHRTRELSAA RLFFVSCKHC YTYYCSRECR
1321 HNNWPNHSGR CSFARINTLC KDVIMKVRED EQAQAFMSKV ARDGFSVSGR GSVNIRLSSP
1381 QLAQAYVSNG WRALSAYPND QLLYYYTVKA LIAERKEPSL IALCNRYEPR EKFILSVSII
1441 ADIEHCPETP PPETRELSAV QFSSPRSRYE AIQNQNAPYF SEFAHNV
//