LOCUS SBV53381.1 1487 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Apical junction molecule protein. ACCESSION BX284606-2110 PROTEIN_ID SBV53381.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ajm-1" /locus_tag="CELE_C25A11.4" /standard_name="C25A11.4g" /note="Confirmed by transcript evidence" /db_xref="GOA:A0A1C3NSL9" /db_xref="InterPro:IPR002893" /db_xref="InterPro:IPR038825" /db_xref="UniProtKB/Swiss-Prot:A0A1C3NSL9" /db_xref="WormBase:WBGene00000100" intron_pos 3:2 (1/20) intron_pos 106:1 (2/20) intron_pos 146:0 (3/20) intron_pos 204:0 (4/20) intron_pos 227:0 (5/20) intron_pos 265:0 (6/20) intron_pos 571:2 (7/20) intron_pos 632:2 (8/20) intron_pos 849:2 (9/20) intron_pos 873:1 (10/20) intron_pos 931:0 (11/20) intron_pos 972:0 (12/20) intron_pos 1011:2 (13/20) intron_pos 1152:0 (14/20) intron_pos 1205:1 (15/20) intron_pos 1240:2 (16/20) intron_pos 1280:2 (17/20) intron_pos 1320:2 (18/20) intron_pos 1385:0 (19/20) intron_pos 1430:2 (20/20) BEGIN 1 MQKTKDEMDA TSERPRSPLD LPPPPASVVL HPSAPPPPPP PLSSTEVVGN TTTTTTTHYA 61 PKTWNDPSIT TAPKIPVSLL SGAQPLPSVL TQRTTTSSYS APNYSASSMS GVPSDVAPPP 121 PLPIPNQSSS SAASYQHHHA SSISKSISSS REDLLSEHAT SRSTVREIPV HRAPSTAPSH 181 SSVFEYHMMP TTTSTYHHVE TPSDEYYRRE VMTRTIITRS TEALSQTPLG RPASPLDRYL 241 PYPTTTTTTS GDGRTREEKT VDYKVTYHRD IEEQERRIRE DQARRQQEEQ DRRDREDNAR 301 RILAQREHQE MERLREQQNL SERALAERER ADKERLQQER LLRQQREKKR REEWDRLESI 361 RLAEEEAELA RRRALEKERI DREKAEEERK TMERLERERA RLERERLEEE RRQKEKAETE 421 RIERERREHE RIEIERIERI KRERIERERR EREEKKAEED RLLRERLELE RIERERRELE 481 ARERQELELQ RREAEDRERQ RLEDEAREMR RREEERREAE LVADVHRQAE ERERLRKRQE 541 REEAERLERI RLEQQKIDME RIDAERRERE RKEEERREFE LIEAARRKKE ARDRDRLDEM 601 ERERVREEEE RREKERREQE RRIAAEKERK RRQEEEEEIA RLNELQRAAA ARQAQRNAEL 661 DRQRQRDELD RKAQELSERE MREKERRDRE RANEEAQLAD LLERERHNQL IRENERREAV 721 ERANNRRLED RRSRDKLDHI VRERSEKEQF ELEKRRLLAE KEAMNRKKNH LLSSETLAKL 781 TQPMYYTTRE PEVTTKVERQ VIERIDRNVW VEDVPYAPSQ SAMGYLDNDE NNRDRLYNPN 841 DLNRNGSSRS RYQRAKNEKA RRDFYHSSQD SADPVTERFR KSTDDLTTRS RPEYRGPLLQ 901 KFHDSEFRTT ALNETDGLPY RRMGPSPYEQ PFAKLLEETE RRYAHYNSRA SNPSIYQSSR 961 YYYPERHGQP QHTDNTRAES VVAYERESRR ESPADQAHIR SRSADYLMDR RIREETEVPE 1021 NQLQKTRVEP HDQSPRESRI SEYEMRFRKS TEKLTVPDWY RENRPQGQTA QTSTYRYGNG 1081 VEPMSTTTTT TTVINGTSSH QQAPPPVPPQ PIGNIGLPRG MFDRYKDDIE ELRRSRSSLH 1141 QTGQQETSNR QGSTLSVGGI VDQGHALPGY TVSEVPNAWN LHTSRTSRVV EVADTFVGTS 1201 SHEYGNFTNR YGGRVTIEEV LDSIFQKVTP TNQRLNFDRS YPQADELFQG NVDGPGIYTN 1261 NYSVMRQVLK SPERAEHILQ NEELFVRCTE CHRTRELSAA RLFFVSCKHC YTYYCSRECR 1321 HNNWPNHSGR CSFARINTLC KDVIMKVRED EQAQAFMSKV ARDGFSVSGR GSVNIRLSSP 1381 QLAQAYVSNG WRALSAYPND QLLYYYTVKA LIAERKEPSL IALCNRYEPR EKFILSVSII 1441 ADIEHCPETP PPETRELSAV QFSSPRSRYE AIQNQNAPYF SEFAHNV //