LOCUS RID60940.1 2421 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010632-136
PROTEIN_ID RID60940.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 28488603)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A5"
protein /locus_tag="BRARA_E00122"
/db_xref="Phytozome:Brara.E00122"
intron_pos 128:1 (1/15)
intron_pos 990:1 (2/15)
intron_pos 1135:2 (3/15)
intron_pos 1212:0 (4/15)
intron_pos 1258:0 (5/15)
intron_pos 1349:0 (6/15)
intron_pos 1431:0 (7/15)
intron_pos 1548:0 (8/15)
intron_pos 2000:0 (9/15)
intron_pos 2019:0 (10/15)
intron_pos 2156:0 (11/15)
intron_pos 2230:2 (12/15)
intron_pos 2275:1 (13/15)
intron_pos 2349:1 (14/15)
intron_pos 2392:0 (15/15)
BEGIN
1 MPETSQDPIS LTDPIDQLPL RLLRSEIVPP APSRSNSSID WLPDFAGYSW LAYGASSLLV
61 VSHLPSPLRG EDSTNGPLFR QILEVSGDVS SPVTAVSWSP VTPSVGELAV GSGSYVRLFA
121 RDLSDLNGSF CWSQSAVLLQ ETKVEAIEWT GSGDGMIVGG TDIVLWKRRN QSWEIAWKFP
181 GDYLQDLVSS TWSIEGSFAS AASWSKFSTE SDEAGKGVLA YYRDGEIYRK VELPHPQWIS
241 MIQWRPVAAE QSVECAGKSV RNVLMTCCLD GAVRLWCEVD GGKSKKGMRD VHGHKKSFCV
301 AAVIEINQVL DGCLGRDLFV FWGTRSGGIL KTIEGANQLF TTEKYDHENV GNCEWLVGQG
361 PGKSASLWAV HCLDDISPMR FPRITLWASQ ETNGTGLEPL SITDATGFSD RLPLKKVSVL
421 RNNLYGTPDI CSSIYLSSRN TIYWSSLHTV KSPALEDSPP DKSSVLQCIT DKVLDLDGHG
481 GKILQVAFTP IISEAGYTAS LDYSGLIIIW SSYDHLNRAI DHPISVSSWK PCGRLQSQEL
541 RLKYTSICWA PSSLNDEIFL LAGHVQGIDC YSVKNGGRVY GGFLTHYICT IPLAVSQPFE
601 DGPTSIFARP LPDSCGKTFK SNSFLLLSVW MKDKRFDALS WKVTLHHFNA AESTCDCHFH
661 EFDSMESGKW LFEDTFAGKK NCIAVRSCSS ELPESHRYDE VTSFAVVNPS GRALEKDMNI
721 ESQAYTMATG HANGSLKLWR SSLQESSTPS IMWELVGMLT IGKSPVSAIS LTESGHKIAA
781 LCTENHSKAV RTISVWEIVH LLDSGVFILE DKLHVDAEVV AVRWSTVGND QLILGVCTQN
841 EMRVYGIARQ PCRSTSFAVS DYSSEAQIWQ CFAVTRTFSA IHDLWWGSKA MTALAHNDYV
901 SLHGQWLAVT DKKQKTDNNP EIFAANLPKL VNATEGRDSE LLSNSLPLTA TAYGSDTLKD
961 TTSMLHIVEK LGGALPLYHP HALLIAIRSA SAALRHLAEN ITSGDASVKD HGVKSDLCQD
1021 ILLSKYYEGS VSNGPNRKDF HWGGTSGSML QNSQFQAGLQ SNFSMDSYSP NGSHSSPATD
1081 LEFTGFCEQL EKLSDEGNIS RTEKIQYFAI VDLLREIGNP HSTSVYASLD EAGRRFWITL
1141 RFKQLYLARS SGKPASVEEL DIDSSMIGWA FHSESQENLS GSLLPIESSW QQMRSLGFGF
1201 WCSDVAQLRP RMEKLARQQY LKNKKPKDCA LLYIALNRIQ VLAGLFKISK DEKDKPLEEK
1261 NKAAALKNAY VLMGKHQLEL AIGFFLLGGE ASSAINVCVK NLQDEQLALV ICRLVDGQGG
1321 ALESNLINKY ILPSAVRRGD FWLASILKWE LGEYHQSILA MAGSLENPAN GSSTVTSNHI
1381 SFVDPSIGLY CLMLTTKNSL KNAVGERNAS NLSRWATLMT ATAFSRCGLP LEALECLSAS
1441 ASGHGGTHQA SGQSNGHLGT PRGVLELSDR NSSNWVSSGV SSTVDTRFKL SLAAHSLSKL
1501 LREATALLRS SEIVLCEKLS GFQHKLQTSL ELFYQRFSLS SSFLRNTMIM SAYNSGLLLS
1561 MGYNVFQENS SSGRSLNKSQ TNEDLLQYSA LCKLILKATE ENSFILSRII AACSVTCFHS
1621 VPCLEENNVS SGPEPKLSNA LRFYFQGILQ SFSSFETTIR LCLNSSLEDL KTRLAVVLDL
1681 VEYCSRLAMA WILGDVDCLF RIVQPLTISY FHGHMPYEVD LESLKRVYHQ EVSVSVPDAS
1741 DAGLNSIVEN NEVGYPVSSI PGDERRLVTQ ACFWRHVSDF VKHKMVSSSI DLDDGISNSE
1801 SSEKFDAQTS FDSSGDIVCV TEKIMSVLGK TLVSTIAQLS SYHVKQLVLS LKQKLEKRIQ
1861 VPTLLWLHGC RESQANFINR AIPDSSTENE DNSDLAVSVR FWTLCVDPHL VLEAFLLENF
1921 DISEWSKLKP LEDWSNMYRE VKGKNELNVP CNQDGLSSNE VASLANHASN SSQKAATASE
1981 NSAFQDPKEI HTRTGELIQA LSINAINHRQ AALASNRKGI IFFNQEDGGP CYDQSNYIWS
2041 HADWPRNGWA NSESTPVPTC VSLGVGLGDK KGAHLGLGGA TVGDFSLSKP GKSHRVPAYT
2101 GLGVSGLGWQ TQEDFEQFID PPPTVETVIA SAFSSHPTMP LFLVGSSNTH IYLWEFGKDR
2161 ATATYGVLPA ANVPPPYALA SISAVQFGPC GHRFASAALD GTVCTWQSEV GGRSNVYPVE
2221 SSICFNGFAS DVKYISSSGS IVAASGYSSS GANVVVWDTL APPSTSQASI SCHEGGARSI
2281 SVFDNDIGSG SISPMIVTGG KNGDVGLHDF RYIATGKMKK QRNVDGRSST DGDQNKNGML
2341 WYIPKAHLGS KDGDVKLWDA KAAKMIHHWP KLHERHTFLQ PNSRGYGGII RAGVTDIQVC
2401 PNGFITCGGD GTVKFISLRN S
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