LOCUS RID60940.1 2421 aa PRT CON 13-SEP-2018 DEFINITION Brassica rapa hypothetical protein protein. ACCESSION CM010632-136 PROTEIN_ID RID60940.1 SOURCE Brassica rapa (field mustard) ORGANISM Brassica rapa Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. REFERENCE 1 (bases 1 to 28488603) AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K., Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S., Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S., Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B., Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T., Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S., Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B., Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T., Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H., Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M., Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K., Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S., Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E., Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N., Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R., Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M., Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A., Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R., Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y., Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T., Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R., Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J. TITLE WGS assembly of Brassica rapa FPsc JOURNAL Unpublished REFERENCE 2 (bases 1 to 28488603) AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K., Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S., Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S., Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B., Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T., Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S., Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B., Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T., Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H., Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M., Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K., Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S., Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E., Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N., Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R., Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M., Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A., Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R., Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y., Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T., Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R., Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J. TITLE Direct Submission JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell Drive, Walnut Creek, CA 94598, USA COMMENT ##Genome-Assembly-Data-START## Assembly Method :: Meraculous v. May_2013 Assembly Name :: Brassica_rapa_FPsc_v1.3 Genome Coverage :: 155x Sequencing Technology :: Illumina Hiseq ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Brassica rapa" /mol_type="genomic DNA" /cultivar="FPsc (B3)" /db_xref="taxon:3711" /chromosome="A5" protein /locus_tag="BRARA_E00122" /db_xref="Phytozome:Brara.E00122" intron_pos 128:1 (1/15) intron_pos 990:1 (2/15) intron_pos 1135:2 (3/15) intron_pos 1212:0 (4/15) intron_pos 1258:0 (5/15) intron_pos 1349:0 (6/15) intron_pos 1431:0 (7/15) intron_pos 1548:0 (8/15) intron_pos 2000:0 (9/15) intron_pos 2019:0 (10/15) intron_pos 2156:0 (11/15) intron_pos 2230:2 (12/15) intron_pos 2275:1 (13/15) intron_pos 2349:1 (14/15) intron_pos 2392:0 (15/15) BEGIN 1 MPETSQDPIS LTDPIDQLPL RLLRSEIVPP APSRSNSSID WLPDFAGYSW LAYGASSLLV 61 VSHLPSPLRG EDSTNGPLFR QILEVSGDVS SPVTAVSWSP VTPSVGELAV GSGSYVRLFA 121 RDLSDLNGSF CWSQSAVLLQ ETKVEAIEWT GSGDGMIVGG TDIVLWKRRN QSWEIAWKFP 181 GDYLQDLVSS TWSIEGSFAS AASWSKFSTE SDEAGKGVLA YYRDGEIYRK VELPHPQWIS 241 MIQWRPVAAE QSVECAGKSV RNVLMTCCLD GAVRLWCEVD GGKSKKGMRD VHGHKKSFCV 301 AAVIEINQVL DGCLGRDLFV FWGTRSGGIL KTIEGANQLF TTEKYDHENV GNCEWLVGQG 361 PGKSASLWAV HCLDDISPMR FPRITLWASQ ETNGTGLEPL SITDATGFSD RLPLKKVSVL 421 RNNLYGTPDI CSSIYLSSRN TIYWSSLHTV KSPALEDSPP DKSSVLQCIT DKVLDLDGHG 481 GKILQVAFTP IISEAGYTAS LDYSGLIIIW SSYDHLNRAI DHPISVSSWK PCGRLQSQEL 541 RLKYTSICWA PSSLNDEIFL LAGHVQGIDC YSVKNGGRVY GGFLTHYICT IPLAVSQPFE 601 DGPTSIFARP LPDSCGKTFK SNSFLLLSVW MKDKRFDALS WKVTLHHFNA AESTCDCHFH 661 EFDSMESGKW LFEDTFAGKK NCIAVRSCSS ELPESHRYDE VTSFAVVNPS GRALEKDMNI 721 ESQAYTMATG HANGSLKLWR SSLQESSTPS IMWELVGMLT IGKSPVSAIS LTESGHKIAA 781 LCTENHSKAV RTISVWEIVH LLDSGVFILE DKLHVDAEVV AVRWSTVGND QLILGVCTQN 841 EMRVYGIARQ PCRSTSFAVS DYSSEAQIWQ CFAVTRTFSA IHDLWWGSKA MTALAHNDYV 901 SLHGQWLAVT DKKQKTDNNP EIFAANLPKL VNATEGRDSE LLSNSLPLTA TAYGSDTLKD 961 TTSMLHIVEK LGGALPLYHP HALLIAIRSA SAALRHLAEN ITSGDASVKD HGVKSDLCQD 1021 ILLSKYYEGS VSNGPNRKDF HWGGTSGSML QNSQFQAGLQ SNFSMDSYSP NGSHSSPATD 1081 LEFTGFCEQL EKLSDEGNIS RTEKIQYFAI VDLLREIGNP HSTSVYASLD EAGRRFWITL 1141 RFKQLYLARS SGKPASVEEL DIDSSMIGWA FHSESQENLS GSLLPIESSW QQMRSLGFGF 1201 WCSDVAQLRP RMEKLARQQY LKNKKPKDCA LLYIALNRIQ VLAGLFKISK DEKDKPLEEK 1261 NKAAALKNAY VLMGKHQLEL AIGFFLLGGE ASSAINVCVK NLQDEQLALV ICRLVDGQGG 1321 ALESNLINKY ILPSAVRRGD FWLASILKWE LGEYHQSILA MAGSLENPAN GSSTVTSNHI 1381 SFVDPSIGLY CLMLTTKNSL KNAVGERNAS NLSRWATLMT ATAFSRCGLP LEALECLSAS 1441 ASGHGGTHQA SGQSNGHLGT PRGVLELSDR NSSNWVSSGV SSTVDTRFKL SLAAHSLSKL 1501 LREATALLRS SEIVLCEKLS GFQHKLQTSL ELFYQRFSLS SSFLRNTMIM SAYNSGLLLS 1561 MGYNVFQENS SSGRSLNKSQ TNEDLLQYSA LCKLILKATE ENSFILSRII AACSVTCFHS 1621 VPCLEENNVS SGPEPKLSNA LRFYFQGILQ SFSSFETTIR LCLNSSLEDL KTRLAVVLDL 1681 VEYCSRLAMA WILGDVDCLF RIVQPLTISY FHGHMPYEVD LESLKRVYHQ EVSVSVPDAS 1741 DAGLNSIVEN NEVGYPVSSI PGDERRLVTQ ACFWRHVSDF VKHKMVSSSI DLDDGISNSE 1801 SSEKFDAQTS FDSSGDIVCV TEKIMSVLGK TLVSTIAQLS SYHVKQLVLS LKQKLEKRIQ 1861 VPTLLWLHGC RESQANFINR AIPDSSTENE DNSDLAVSVR FWTLCVDPHL VLEAFLLENF 1921 DISEWSKLKP LEDWSNMYRE VKGKNELNVP CNQDGLSSNE VASLANHASN SSQKAATASE 1981 NSAFQDPKEI HTRTGELIQA LSINAINHRQ AALASNRKGI IFFNQEDGGP CYDQSNYIWS 2041 HADWPRNGWA NSESTPVPTC VSLGVGLGDK KGAHLGLGGA TVGDFSLSKP GKSHRVPAYT 2101 GLGVSGLGWQ TQEDFEQFID PPPTVETVIA SAFSSHPTMP LFLVGSSNTH IYLWEFGKDR 2161 ATATYGVLPA ANVPPPYALA SISAVQFGPC GHRFASAALD GTVCTWQSEV GGRSNVYPVE 2221 SSICFNGFAS DVKYISSSGS IVAASGYSSS GANVVVWDTL APPSTSQASI SCHEGGARSI 2281 SVFDNDIGSG SISPMIVTGG KNGDVGLHDF RYIATGKMKK QRNVDGRSST DGDQNKNGML 2341 WYIPKAHLGS KDGDVKLWDA KAAKMIHHWP KLHERHTFLQ PNSRGYGGII RAGVTDIQVC 2401 PNGFITCGGD GTVKFISLRN S //