LOCUS RID52470.1 773 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3285
PROTEIN_ID RID52470.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H03064"
/db_xref="Phytozome:Brara.H03064"
intron_pos 32:2 (1/13)
intron_pos 86:2 (2/13)
intron_pos 125:2 (3/13)
intron_pos 154:0 (4/13)
intron_pos 190:1 (5/13)
intron_pos 213:0 (6/13)
intron_pos 255:0 (7/13)
intron_pos 572:2 (8/13)
intron_pos 639:2 (9/13)
intron_pos 660:0 (10/13)
intron_pos 698:0 (11/13)
intron_pos 736:0 (12/13)
intron_pos 766:0 (13/13)
BEGIN
1 MNFEMMESIW SHDQPPPPPP LVPSPKPVAR QRSRSVFRLL VQREISPKTK SVPRKRWGVR
61 RCDTADSPCG TSSETVSEQR HNLISWVEAE SLQHLSADYC PLVPPPRSTI AAAFSSDGRT
121 LASTHGDHTV KIIDCETGKC LKVLSGHRRT PWVVRFHPRH SEIVASGSLD HEVRLWNAIT
181 SECIRSHDFY RPIASIAFHA EGDILAVASG HKLHIWHYNK TGEDATPAIV LKTRRSLRAV
241 HFHPHGVPLL LTAEVTDIDS SDSAMTRATS PGYLRYPPPA IFFTNTQSGG SHTSMAAELP
301 LVPLPYLLLP SYSPDDPRIQ YSTAATGPRS AQSRFQSNQS SVEQGGGRTM STPPPLPLAI
361 SGDLVPENSQ ARARTSTTAV DAMDIDEAQP VGGGNRIPRQ VSSQSDLLEF GQFQQLFHSR
421 DRVSWEVPFL QGWLMAQSQA GVLPTGSSGT APPHTGSSSA SHTSTASLEA AVASLEIPGG
481 VNLYGVSARD RTRFSGSGLA GGLASRNAQQ EAGADAQPVV NRLPSELASS IAAAELPCTV
541 KLRVWAHDIK DPCAILRSDK CRLTIHHAVL CSEMGAHFSP CGRYLAACVA CVIPHAEADP
601 GLQTLVQQDS GLATSPTRHP VTAHQVMYEL RVYSLEKETF GSVLVSRAIR AAHCLTSIQF
661 SPNSEHILLA YGRRHGSLLK SIVSDGETTS HFFTVLEIYR VADMELVRIL PSSEDEVNVA
721 CFHPSPGGGL VYGTKEGKLR IFRYNTAAAS NLTAPNSSPE ENLAEVQTYA LEC
//