LOCUS RID52467.1 736 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3282
PROTEIN_ID RID52467.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H03061"
/db_xref="Phytozome:Brara.H03061"
intron_pos 64:1 (1/17)
intron_pos 147:1 (2/17)
intron_pos 168:2 (3/17)
intron_pos 212:0 (4/17)
intron_pos 258:1 (5/17)
intron_pos 341:1 (6/17)
intron_pos 369:2 (7/17)
intron_pos 404:0 (8/17)
intron_pos 447:0 (9/17)
intron_pos 485:0 (10/17)
intron_pos 524:2 (11/17)
intron_pos 555:0 (12/17)
intron_pos 586:0 (13/17)
intron_pos 616:0 (14/17)
intron_pos 656:0 (15/17)
intron_pos 686:2 (16/17)
intron_pos 706:0 (17/17)
BEGIN
1 MGGAASTPRS TGGDDVSVEE YLIATFVGEK SFPLASDVWN KLLELPLRSR WPRDRVHQAC
61 QLFAQSNGNT RHLAKLLIHL SWCLQELLQA SSDDDDDDAH SSLYKKALNA TYISSLFLKH
121 LIENGKSEEL HLSLDESEPV PHGFVMDQDI QNFVMHSVLS FIGSTQVSPN SYVLHQELLN
181 FMVVAMSTQL LSGPSPGPRD ANPFLDAAMA QEKSIVCMAV RRLLLNYISR NHTPNAKTYL
241 YSDGDSPGIL ERVGSAAATF VLLPLNYLVN NTGDGSKYPL AESSLHVLLI LIHYQKSILS
301 DESMTDKSDD SATSESVSKV HVFSSGNTFT KALANARDVE FDRSDLEGNA YSGPHVRIPF
361 ASLFDTLCMC LSDEGAVLLL YSLLQGNSYF KEYVLVRTDM DTMLMPILET LYNASRRTSS
421 NQIYMMLIVL LILSQDSSFN SSIHKMILPS VPWYKEHLLH QTSLGSLMVI ILIRTVQHNL
481 SKLRDVYLQT TCLATLANMA PHAHHLSAYA SQRLVSLFYM LSRKYNKLSD LTGDKLQSIK
541 ISLTGEDDSV SEDLAAELQI FTDFLRLVLD ILNAILTYAL PRNPEIVYAI MHRQEVFQPF
601 KNHPRFHELV ENIYTVLDFF NSRMDTQRSD REWSVQKVLQ FIIDNCRSWR GEGMKMFTQL
661 HFSYEQESHP EEFFIPYVWQ LALSRCGFSF NPDAINLFPV PHQVEEQIED GKGDEVEEGE
721 EKKVKELIEQ RIVFDP
//