LOCUS RID52381.1 920 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3196
PROTEIN_ID RID52381.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02980"
/db_xref="Phytozome:Brara.H02980"
intron_pos 47:0 (1/18)
intron_pos 72:0 (2/18)
intron_pos 110:2 (3/18)
intron_pos 149:0 (4/18)
intron_pos 192:0 (5/18)
intron_pos 208:0 (6/18)
intron_pos 241:2 (7/18)
intron_pos 307:1 (8/18)
intron_pos 404:0 (9/18)
intron_pos 454:0 (10/18)
intron_pos 534:0 (11/18)
intron_pos 584:0 (12/18)
intron_pos 609:1 (13/18)
intron_pos 652:0 (14/18)
intron_pos 709:0 (15/18)
intron_pos 756:0 (16/18)
intron_pos 801:0 (17/18)
intron_pos 869:0 (18/18)
BEGIN
1 MGVMSRRVLP ACGNICFFCC PSLRVRSRHP VKRYKQMLAD IFPRNQDAEP NDRKIGKLCE
61 YASRNSLRIP KINEYLEHKC YRELRNGNIG SVKVVLCIYK KLLSSCKEQM PLFSCSLLTI
121 VPTLLEQTKD VEVQILGCYT LVDFITLQTE NSHMFNLEGL IPKLCQLAQE MGDDERLLRL
181 RSAAMQALAI MVSFIGEHSQ LSMDLDMIIS VILENYMDLE KGQEDTNELN PVTDYNLEKN
241 MENSKSASYW SMVCLCNIAK LAKETTTVRR VLEPLLNAFD SGGYWSPQKS VASSVLLFLQ
301 SRLEESGGNC HVLVSSLIKH LDHKNVTKQQ GIQVNMVKVA TCLVVHAKQG ASGAMTAVIA
361 ELIKHLRKFL QNAAESDLSA DETKLNSELQ LALENCIAEL SNKVGDAGPI LDMLAVVLET
421 ISTNVLVART TASAILRAAH IVSVVPNVTY HKKVFPDALF HQLLLAMSHT DCETRVVAHN
481 IFSVLLLGTL RLPWSDQHKE TSDAVEESLN SDQYKDVNHT SLSSLRDVDG GIKSLCSLRL
541 SSNQVNMLLS SLWIQATSTE NTPANFEAMA STYSTTILFS LAKRSKHKAL VWCFQLAFSL
601 RNLSLNQNGG LQLSRRRSIF TFASYLLIFS AKISNIPELI PIVKESLTAQ MVDPCLVLEG
661 DIRLRAVCSG SETDDSDALN SSVIVTNDSR MKEIVINHFT SKFPTLSEEE QSNMRKEVNS
721 DFCRDDAHPL VAPLFMDTAG SDSPLNQIEL PAFEEVELPA IVAFEGISPG ASGSQSGYTT
781 TLSTNTNPVD VLSVNELLES VSETARQVAS LPVSSLPVPY DQMMNQCEAL MTGKQQKMSV
841 LKSFKPEATK AITFPEDAEE EEVFLLKETE EANEDDQKAL TVSQVQPQGQ LASCSHGVEQ
901 NSFRLPPSSP YDEFLKAAGC
//