LOCUS RID52310.1 867 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3125
PROTEIN_ID RID52310.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02917"
/db_xref="Phytozome:Brara.H02917"
intron_pos 28:1 (1/12)
intron_pos 208:2 (2/12)
intron_pos 368:1 (3/12)
intron_pos 416:2 (4/12)
intron_pos 440:2 (5/12)
intron_pos 464:2 (6/12)
intron_pos 490:2 (7/12)
intron_pos 540:1 (8/12)
intron_pos 606:0 (9/12)
intron_pos 648:1 (10/12)
intron_pos 670:1 (11/12)
intron_pos 733:2 (12/12)
BEGIN
1 MKTLNKLMLV ACATFSIIHL VMSQNQQGFI SLDCGLPSNE PPYNEQFTNL TYISDANFIQ
61 GGKTGYIQNN SETVSVSKPN RVLRYFPDGI RNCYSLSVTQ DTKYLIRTVF VYGNYDGLNS
121 PPRFDLYLGP NIWTSLDLKT SGLSETEEII HITRSNSLDI CVVKTGTSTP LISVIELRPL
181 PYHTYTTRTG SLRTLAHLYF SYSDKIISYP KDVYDRIWEP YFLLEWTQIT TTLNVTDSSN
241 GYAPPRDAIT TAAIPTNASE PLTIIWSLET SDDETYGYLY FAEIQQLRAN ETREFKIVAN
301 GRVDYDSYSP MNFEADTVFN HVSLKCEGAV CRLQLLRTPK STLPPQMNAM EIFSAIYFPQ
361 SETSTDDVIA IKNIQSTYNL SRTSWQGDPC VPKQFSWIGL SCNVMDTSTP PRIITLDLSE
421 SGLTGMISPS IQNLSQLQEL DLSNNNLTGE VPEFLAKMTS LLVINLSGNN LRGSVPQSLH
481 NRKKDGLKLS VDANIKQCGS CKPRSWVVVI VVSVSCVAII IIVLVLIFFF RKRKRSSCKV
541 TRPSLEMKNR RFTYSEVKEM TNNFQVVLGK GGFGVVCHGY LNNEHVAVKV LSQSSTQGYK
601 EFKTEVELLL RVHHVNLVSL IGYCDEGNDL ALIYEYMGNG NLKEHLSGKR RGSVLNWSNR
661 LKIAIESALG IEYLHIGCKP PMVHRDVKST NILLGETFEA KLADFGLSRS FLVGSNTHVS
721 TNVAGTIGYL DPEYYQKNWL TEKSDVYSFG IVLLEIITGQ PVIEQSREKP YIVEWAKSML
781 ANGDIDSIVD PNLHRGYDKS SSWKALELAM SCINPSSTER PNMTRVAHEL NECLEIYENL
841 SKRSQDANST NSMGHGTSFI SDTPSAR
//