LOCUS RID52253.1 1157 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3068
PROTEIN_ID RID52253.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02865"
/db_xref="Phytozome:Brara.H02865"
intron_pos 90:0 (1/9)
intron_pos 114:0 (2/9)
intron_pos 140:0 (3/9)
intron_pos 305:0 (4/9)
intron_pos 382:0 (5/9)
intron_pos 436:0 (6/9)
intron_pos 952:1 (7/9)
intron_pos 987:0 (8/9)
intron_pos 1053:0 (9/9)
BEGIN
1 MGTELMRICV KEESDELPSV PPGFESYATF TLKRVVPDPG AAMESVSSVS NQGEMEIESD
61 EAKAARSLRR RPWINYDDDS NALSQNLDQT CGVKPSLPKG VTRGCAECND CQKVTARWQP
121 DEARRPDLED APIFHPTEEE FEDTLSYIAK IRPKAEKYGI CRIVPPPSWK PPCPLKEKQV
181 WEGSKFTTRV QRVDKLQNRS SMKKVSKLSN QIRRKKRKCM KMGMDPDSAS PGMSELETFG
241 FEPGPGFTLK DFKKYADEFK AQYFKKSETS TDGECTVGGS WEPAVEDVEG EYWRIVDKAT
301 EEIEVLYGAD LETGVFGSGF PKKSSSHEAA SSSEEKYAKS GWNLNNFSRL PGSLLKHEGS
361 DISGVLVPWL YIGMCFSSFC WHVEDHHLYS MNYMHWGAPK LWYGVAGKDA VKLEEAMRKH
421 LPDLFEEQPD LLHKLVTQLS PSKLKTAGVP VHRCVQHAGE FVLTFPRAYH AGFNCGFNCA
481 EAVNVAPVDW LPHGQIAIEL YCQQGRKTSI SHDKLLLGAA REVVKADWEL NLLKKNTIDN
541 LWWKEFSGKD GILAATLKAR IDMERTRREV LCSSSLALKM HSNFDATNER ECCICFFDLH
601 LSAAGCRCSP EKYSCLTHVK QLCSCPWVAK YYLFRYDMDE LNVLLEAVEG KLSSVYRWAR
661 QDLGLALSEH LSGSKMETGE EEPQAAALLG KDLQLKVTSR EDLTRGLEKT SRLSDANLLL
721 KVKEEQLTPS HSMKTVKEET VYDSVPAAKS ISGKKNTQSV PDDVILLSDD EHDVSSKRVS
781 EKRDAVLSGK HLKIHERPTH VLALEAPSIT PVPMVEKQAI SLPDRQITMP LPTNDQRAVQ
841 GDVTSSVSPA EVNAVVDGLA RVTSNQDGVN PTSSKSKISG GLAIQEVVDG IRSTSGTPSC
901 SQNNSPDRII RQKGPRIAKV VRRINCNVEP LNYGCVLSGK SWCNRRAIFP KGFRSRVKYI
961 NVLDPTRMSF YVSEILDAGR NSPLFMVYLE GVPSEVFAHL SPTRCWEMVR DRVNQEISKQ
1021 HKAGKLDLPP LQPSGSPDGF EMFGYTSPAI LQAIEALDVN RVCTEYWDSR PYSRPQVQFP
1081 ANALLLREAN TSIQSSDVRS LQKAPRQRLL PAGTKSNLKV LLKKANMEEL SSLQEVLSES
1141 NIDLVTELVK EEIQKRC
//