LOCUS RID52231.1 903 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3046
PROTEIN_ID RID52231.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02846"
/db_xref="Phytozome:Brara.H02846"
intron_pos 190:0 (1/12)
intron_pos 237:2 (2/12)
intron_pos 271:0 (3/12)
intron_pos 315:1 (4/12)
intron_pos 333:2 (5/12)
intron_pos 531:0 (6/12)
intron_pos 641:0 (7/12)
intron_pos 755:0 (8/12)
intron_pos 778:1 (9/12)
intron_pos 807:0 (10/12)
intron_pos 847:0 (11/12)
intron_pos 870:2 (12/12)
BEGIN
1 MSGANEQTRS SSGNNANGEG TIGIPDELRC KRSDGKQWRC TAMSMPDKTV CEKHYVQAKK
61 RAANSASRAS QKKVQRRSSP PLGEADTYSV DDHLVIPPPS SSNGHASGSN KYDGGGREKR
121 HDKIMSRYLP ETPMMRGFSP RVAVDLNDEV DGDDGGMFEE SYRSYRRTPP SAGVMERSRE
181 RSQQSMSPME YSGESTDVSE ESLGQTCHHC LRKDRERIIS CLKCNQRAFC DACITTQYSE
241 IPLEEVEKVC PACRGLCDCK HCLRSDNTIK VRIQKVPVLD KLQYLYRLLS AVLPVIKQIH
301 LDQCTELELE KRLRGAEIDL VRARLKADDQ MCCNVCQVPV VDYYRCCPNC SFDLCLRCCQ
361 DLRAESSVEI GGTSQTIGDR RTGVPKLKLN FSNKFPEWEV NSDGSIPCPP KEHGGCGSKS
421 LNLARIFKMN WVAKLVKNAE EMVNGCKVSD LCSPELCDNP VYSPSVETVR SDGVATFEKQ
481 WSEGRIVIVK RVLEESSFSR WDPETIWRDI EDVSEHDPFL KAINCLDGSE VEVRLGEFRK
541 AYRDGRNKET ALPFSWKLKD WPSPSASEEF IFYQRPEFIR RFPFLEYIHP RLGLLNVAAK
601 MPHYSLQNDS GPKVIVSCGT YKETDGGDSS NSIHYSMRDM VYLLVHTPEG TKLERVRETT
661 NHGPGKADEK MGENESLVSP KEKLIDGELH DLSLGTSNTE KNESEMMLSV EPSCTSSCAG
721 GVQWDVFRRQ DVPKLAEYLQ RTFQKPDDSL KCDFVSRPLF EGLFLNEHHK RQLKDEFGVE
781 PWTFEQHRGE AIFIPAGCPF QFRNLQSNVQ VALDFLCPES VGESARLAEE IRCLPYDHKA
841 KPQILEIGKI SLYAASSAIK EVQKLILNPE FGAELGFEDP NLTKAVSNNL DKVIKRPQQI
901 SCT
//