LOCUS RID52223.1 992 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-3038
PROTEIN_ID RID52223.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02839"
/db_xref="Phytozome:Brara.H02839"
intron_pos 42:1 (1/17)
intron_pos 111:0 (2/17)
intron_pos 159:0 (3/17)
intron_pos 240:0 (4/17)
intron_pos 264:0 (5/17)
intron_pos 287:0 (6/17)
intron_pos 342:0 (7/17)
intron_pos 369:1 (8/17)
intron_pos 401:1 (9/17)
intron_pos 460:1 (10/17)
intron_pos 496:0 (11/17)
intron_pos 555:2 (12/17)
intron_pos 609:2 (13/17)
intron_pos 694:1 (14/17)
intron_pos 749:0 (15/17)
intron_pos 811:0 (16/17)
intron_pos 948:2 (17/17)
BEGIN
1 MATEEQDSRL CLASILEDFI KQRNIQVSVD VDSSSKNADE TSVVGGRDLP ADPSDLKRNE
61 AARWIRHTLG VVGGRDLPAD PSEDDFRIAL RSGILLCNVL NKVKPGAVPK VVEAPNDPLV
121 NQEGAALSAF QYFENLRNFL VVVEEMGIPT FEVSDFEKGG KSTRIVECVL ALKSYREWKQ
181 SGGSGTWRYI VTSKPTTFGI AKQYKRKDSE ASVDAVTTST PSNTPSSEQP LFVSNTKNEG
241 TVSSIDAIVR AVFSDKSKEE VPSIVEDMLK SVMVEYERRL ATQSAMYVEE DVTKMVNNNM
301 EASQANNAEV SKIQDRDVYV ISKDKAEKQQ MILDRQKTHT KELKHDIKAV KAGISLLQMK
361 YQQEFKILGE HLHGLAYAAT GYQRVLEENR KLYNQVQDLK GSIRVYCRVR PFLPGQTSAL
421 TTVDHIEDST ISIATPSKYG KEGRKSFTFN KVFGPSASQE AVFADTQPLI RSVLDGYNVC
481 IFAYGQTGSG KTFTMMGPNE LTEESLGVNY RALSDLFHLS SERKETFSYK ISVQMLEIYN
541 EQVRDLLATN GQTSRLEIRN SSQDGINVPE ATLVPVSTTS DVISLMNLGQ KNRAVSATAM
601 NDRSSRSHSC LTVHVQGRDL TSGATLRGSM HLVDLAGSER VDKSEVTGDR LKEAQHINKS
661 LSALGDVIAS LSQKNNHIPY RNSKLTQLLQ DSLGGQAKTL MFIHISPEVD TLGETLSTLK
721 FAERVATVEL GAARVNKDTS EVKELKEQIA SLKLALARKE SELDQTQIPR ALTPDKLLRR
781 KSLGVSKSAN TRQFQTKHKP SLVDDVNSIE GQSDSASSVD LQGLVGSSPP SWKSPSTDGK
841 EEIGEWVDKH EDEITRDKRV SSMKREPSSR AIESKKINVV DKGFEVRKIP YEEEANESDE
901 TATSDGSEPS NMMWQLNVQV NVPRAAASSN GSSGGSSTKL KKSLSKTKSM IPSLIPAPTR
961 RLSLGANGSP GQTSSSRQSS NTVVVKKRQN PK
//