LOCUS RID52117.1 1183 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2932
PROTEIN_ID RID52117.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02738"
/db_xref="Phytozome:Brara.H02738"
intron_pos 8:2 (1/24)
intron_pos 64:2 (2/24)
intron_pos 84:0 (3/24)
intron_pos 222:0 (4/24)
intron_pos 280:0 (5/24)
intron_pos 323:2 (6/24)
intron_pos 446:0 (7/24)
intron_pos 490:0 (8/24)
intron_pos 519:0 (9/24)
intron_pos 561:2 (10/24)
intron_pos 602:0 (11/24)
intron_pos 652:2 (12/24)
intron_pos 698:0 (13/24)
intron_pos 739:1 (14/24)
intron_pos 763:0 (15/24)
intron_pos 786:0 (16/24)
intron_pos 827:0 (17/24)
intron_pos 880:0 (18/24)
intron_pos 907:0 (19/24)
intron_pos 961:0 (20/24)
intron_pos 979:2 (21/24)
intron_pos 1012:0 (22/24)
intron_pos 1043:2 (23/24)
intron_pos 1069:2 (24/24)
BEGIN
1 MTNSNQVSRS HLPEVQKPKA PQTNWSEHAK ALEDPSSRTK HLSSGFLYAL ESQKPRKSSD
61 MAARSIAFPS VNAHTLAPPQ IAKAWRALSS LSLNKTYLRP GITPPVDDGG TNGSYSARER
121 STVKVTCSTD GSFYSNNQQN QSQMGVPGTG RSFHSFPPPV PGDGKNFAEK FRRINDETRE
181 PETSSAHLNG VEKPFKNSTF AAEQLGSGEA CLDEIDDDIL QNIDVDQIMM EHYQSTSTPP
241 SSVSSLPSRT PPVDRSASRR EEECSLPPEL CSNCSHGIKL GLCPEASTHL EQMKNMLIAI
301 SNELLDDDTD LSPDRIQELR QERLLLKKQI QQLEDHIRDK EKQKSQFLSS TATRASQYET
361 PKSTNLRFDH PQTDSRAHFN EQGRYASDSW NMPKDSSFSV DRYGLSSAPV EREQYVPRII
421 EVTYTEGSND QKWSSRDFPW TRKLEVSNKK VFGNHSFRPN QREIINATMS GSDVFVLMPT
481 GGGKSLTYQL PALICQGITL VISPLVSLIQ DQIMNLLQAN IPATSLSAGM EWSEQLKIFQ
541 ELSSEHSKYK LLYVTPEKVA QSDSLLRHLD NLNSRGLLAR FVIDEAHCVS QWGHDFRPDY
601 QSLGILKQKF PNIPVLALTA TATASVKEDV VQALGLVNCV VFRQSFNRPN LLYSVVPKTK
661 KCLEDIDKFI KENHFDECGI IYCLSRNDCE KVAQKLQEFG HKAAFYHGSI EPTQRALVQK
721 QWSKDEVNII CATVAFGMGI NKPDVRFVIH HSLPKSIEGY HQECGRAGRD GQRASCVLYY
781 GYGDYIRVKH MISQVGVEQS PMANGYNRVA SSGRLLETNT ENLLRMVRYC ENEVDCRRFL
841 QLVHFGEKFD STNCKRTCDN CSSSQSLIDK DVTLITRQLV ELVKQTGERF SSSHILEVYR
901 GSLNQMVKKH RHETLQFHGA GKHLTKLEVS RILHYLVTED ILVEDVRKSD MYGSVSSLLK
961 VNKSKAASLF SGSQTIMMRF PSSVKVLKPC KAAPTPAKAP LVSADAPPED VNLSAIMYTA
1021 LRKLRTLLVK EAPDGVMAYH IFGNATLQQM SKKIPRTKEE LLEINGLGKA KVLKYGERLL
1081 ETIESTVNEY YGTSKKEESM ISPDSGKRRR DENISPNVTE EDDDFAESSS QSCKKTVRSK
1141 SSEVLHGECV AGDGVGMVME KLDFDFEDED GSEIRPEGRV LPW
//