LOCUS RID51669.1 1045 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2484
PROTEIN_ID RID51669.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02317"
/db_xref="Phytozome:Brara.H02317"
intron_pos 48:0 (1/11)
intron_pos 458:1 (2/11)
intron_pos 531:1 (3/11)
intron_pos 600:0 (4/11)
intron_pos 625:0 (5/11)
intron_pos 649:0 (6/11)
intron_pos 682:0 (7/11)
intron_pos 706:0 (8/11)
intron_pos 733:1 (9/11)
intron_pos 758:2 (10/11)
intron_pos 869:0 (11/11)
BEGIN
1 MGGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL PKPVLFQIWS LSDRSGSGFL
61 GRQDFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPA PRINLSAIPA PQPNPPATTA
121 RPVSSAGYQN AGFRGPGAPN ANVNQNYFPP QQNQQVRPNQ GASGLTSLRP NALPGQFQPV
181 PVGSATRPSQ TIPTGAPGPG GSEYRPSALP GQFQPGPVGI ATRPPQAAPT SAPGPAGSEY
241 RPSALPGQFQ PGPVGSVTRP PQAVPTSASG PGGSTLNLNN LYAGNTSGYS SGFGGGSLAE
301 PSPGIKPESQ VDPKALVISG NGGDMFSSFQ QRPQPTLSNS SMSSAIVPAS TGTQPPPKPN
361 ALDSLQSTFS MLPAGNQPQQ PRPAASSQGP SSGFPHGSAV GPGHPTPAGN NQPPWPKMKP
421 SDVQKYTKVF IEVDSDRDGR ITGEQARNLF LSWRLPREVL KHVWELSDQD NDTMLSLREF
481 CISLYLMERY KEGRPLPPAL PSSIMYDETL LSLSGAPSRG YANAGWGSGQ GYVQQPVMGA
541 RPVIPPTGMR PPVPHPGSGI ASNEQRNQAP ALDDAFASHL GNGYSASTNP QETAVDGEKV
601 DEKKNAYMDS REKLEYYRTK MQDIVLYKSR CDNILNEISE RASADKREAE TLAKKYEEKY
661 KQVAELGSKL TIEEARFREI EGRKMELSQA IVNMEQGGSA DGLLQELMKA LTERCKKHGL
721 EVKSKALVDL PAGWQPGIQE GAALWDEEWD KFEDEGTIFD KSKEQKSSGE KENGTVDDGS
781 GPPPDSPTHL DENYGPFSET SDHHHESEDE SGRSPRDSLV SRTATEVPSP DNAHEKSSEF
841 FDDSNWASAF DTNDDVDSVW GLDASRSQDG DYFGENSGRA DSPTSRSFAG QRKGPFGFDD
901 SVPSTPLSRF GNSPPRFSDA SARDNNFDSF SRFDSFNHSE AGVSSQPERL SRFDSINSSK
961 DFGGAAFSRF DSINSSRDFG GGAEKLSRFD SINSSRDFGG PSLSRFDSMN STKDHGYSFD
1021 DADPFGSTGP FKVSFDDKSP KKNSF
//