LOCUS RID51645.1 1010 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2460
PROTEIN_ID RID51645.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02294"
/db_xref="Phytozome:Brara.H02294"
intron_pos 365:1 (1/11)
intron_pos 542:0 (2/11)
intron_pos 578:0 (3/11)
intron_pos 611:2 (4/11)
intron_pos 642:0 (5/11)
intron_pos 679:0 (6/11)
intron_pos 701:0 (7/11)
intron_pos 721:0 (8/11)
intron_pos 907:0 (9/11)
intron_pos 952:0 (10/11)
intron_pos 991:0 (11/11)
BEGIN
1 MDRKNTSACR GDEDHPFALS SKGSENPKNK SYNVRFDLLG IEDYNEEAED DVNVELSDEL
61 MLGRQVTEET NSKSEDLGEN SRSKKKKKNK SGKTAHEEED LDKILAELGI TPVSPAQPEL
121 VAPSDCSKDG EEETVLSASS KKRKKKKDKD KKVSVEAKEE PSQHQKKVPK HILEMQEMVA
181 RRKEAEEMKK KEEEEKLRKE EEERRIQEER EKEAEEIKQK RKIREKEKML KKKQEGGILT
241 EKQKRDKAFK NKMLSDAGML LASDKHGDSS KRPVYGNKRK PGRTKANDSG SVQVKDHANV
301 TAKLHDIDSA VKEKKQEAGD EEDDWEAKSD DSVNIMGDYD DGKDAPWLVV KKEIKDTAAK
361 AHCSGPVTSD RLALKSEVSD KPKESRPKVD DATRPKDATK RGNDSEVNEV AKESLRSPIC
421 CIMGHVDTGK TKLLDCIRGT NVQEGEAGGI TQQIGATYFP AENIRERTKE LRPDAKLKVP
481 GLLVIDTPGH ESFSNLRSRG SNLCDIAILV VDIMHGLEPQ TIESLNLLRK RNTEFIVALN
541 KVDRLYGWKT CKNSPIEKAL ALQSKDVVIE FNMRLTQVIT QFKEQGLNTE IYYKNKEMGD
601 TFSIVPTSAI SGEGIPDLLL YLVMWSQKTM VEKLTFVDKV QCTVLEVKVI PGHGTTIDVV
661 LVNGVLHEGD QIVACGSQGP IITTVRSLLT PHPMKELRVK GTYQHHREVK AAQCIKITAQ
721 GLEHAVAGTS LHVIGPDVDV DEAKKTAMED MKSVMSLVDK SGEGVYVQAS TLGSLEALLE
781 FLKSPDVKIP VSGIGLGPVH KKDIMKAGVM LEKKKEYATV LAFDVKITTE ARELADNMGV
841 KIFSADIIYH LFDQFKGYVK DVRDEERKET ASEVVFPCVL KILPNHVFKR GNPIILGVEV
901 IDSILKVGTP MCFLKEIGKS RVFVDLGRVA SIHKDKKPLD DAKKGQQVAI KIVASNPGEE
961 KMFGEDFDIE DELVSHISRR SIDILKTLYR DELKNELKLV LKLKMLFKIQ
//