LOCUS RID51521.1 1458 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2336
PROTEIN_ID RID51521.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02176"
/db_xref="Phytozome:Brara.H02176"
intron_pos 104:0 (1/7)
intron_pos 141:2 (2/7)
intron_pos 212:1 (3/7)
intron_pos 241:2 (4/7)
intron_pos 614:0 (5/7)
intron_pos 751:0 (6/7)
intron_pos 1281:0 (7/7)
BEGIN
1 MMKTHSRLKW DIFLSFQRET SHSFTDRLYE ALIKEHVRVW KCHVERKNQV IGPSLVEAIE
61 DSVAFIVVLS PDYAKSHWCL KELAKLCDLR SSLGRPILPI FYEGPFEMDF EEHSKRFGEE
121 EIQRWREAMK IVGNISGFVH SFRGEETRHN ITKRIYDALN VKEKFRVFRD NDGLEGGGDE
181 TSPNIVEAMK DSAASVVVSY ALHVRNVSET PVLFASRTLY PLRLLQVIST TRKDPKPLCQ
241 RENSVDEDMI ELVVKSVLAQ VSNTPEKVGE YTVGLESRVE DLMNLVELKP SCDDVQILGL
301 YGMGGIGKTT LAKAFYNKII AEFEHRVFIS NVRENSSDQD GLVNLQKSFI KALLRSVPEI
361 EDANGGREKI RTSVHEKKIL VVLDDIDNVD QVDALVGEKS WYGEGTVIVI TTRDEEILRR
421 LSVNQKYEVN CLTEMQALKL FSYHSLGKEE PTENLMELSK KIVKITGLLP LAIEVFGSHL
481 YDKKEHEWLT ELEKLKSTQP GDLQAVLALS FKSLDDEEKT VFLDIACLFL KMEIKKEEVI
541 DVLKGCGFKA EAALNVLRQK SLVKFLADET IWMHDQIRDM GRQIDLKEHH GDLETRGRLW
601 DRGEIMNVLN YKKGSSSIQG IVLDFKKKLA RDPSAQDIAL RTLHDKPGIR SVFSYLKNKF
661 VKFPAEEKPK SSEITIPVEH FVPMKKLRLL QINHVELEGD LKLLPSELKW IQWRGCPLKD
721 VPPVFLARQL AVLDLADSGI RRVQSLHRKE MDGNLKVVNL RGCHSLEAIP DLSNHKSLEK
781 LILERCMLLV KVPRSVGNLS KLLQLDFSYC SNLTEFLVDV SGLKSLEKLF LSGCSNLSVL
841 PENIGDMPCL KELLLGDTAI KNLPESISRL KKLVKLSLKG CRSIQELPLC IGMLASLEEL
901 NLTATALQNL PSSIGKLKNL QKLYLMHCAS LSKIPDTINE LKSLKKLFIN GSAVEELPLN
961 PGSLPSLTDF SAGGCKHLKQ VPSSIGGLNS LLDLELDWTP IETLPKEIGD LYFIRKLVLR
1021 NCKSLKVLPE SIGDMDTLHS LFLEGSNIEK LPESFGKLEN LVLLRMNNCK KIKRLPESFG
1081 DLKSLHHLFM QESLVVELPE SFGKLSKLMT LKMLKKPLFR SCESDSETPS FVEVPNSFSN
1141 LMSLEELDAR SWGISGKIPD VLGKLSSLKI LKLGNNYFHS LPSSLEGLLN LRELSLYDCR
1201 ELKCLPPLPC NLEQLNLANC FSLESISDLS KLKILHELNL TNCKKVDDIP GLEHLKALKR
1261 LYMSGCNSKC SSEVKKRLSK ASLKMMVNLS LPGNRIPDWF SQGPLRYSTQ PKRELRGVIL
1321 AVVVALEQEC KDDYQLPDVV EVQAKILKLD LALYTHTLHL SGVPRTSDDQ LHICRYPAMH
1381 PMVTMFKDGY TIQVTKREPP VKQGVELKMH GIHLVYEGDD EFKGEESGFT ETQFTVSQKL
1441 ANFFSTVEEN ESSTECLA
//