LOCUS RID51426.1 1801 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2241
PROTEIN_ID RID51426.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02088"
/db_xref="Phytozome:Brara.H02088"
intron_pos 46:0 (1/32)
intron_pos 88:0 (2/32)
intron_pos 102:0 (3/32)
intron_pos 122:0 (4/32)
intron_pos 143:0 (5/32)
intron_pos 170:0 (6/32)
intron_pos 194:0 (7/32)
intron_pos 210:0 (8/32)
intron_pos 233:0 (9/32)
intron_pos 277:2 (10/32)
intron_pos 303:0 (11/32)
intron_pos 367:2 (12/32)
intron_pos 394:2 (13/32)
intron_pos 461:0 (14/32)
intron_pos 538:0 (15/32)
intron_pos 565:0 (16/32)
intron_pos 605:0 (17/32)
intron_pos 625:0 (18/32)
intron_pos 667:2 (19/32)
intron_pos 700:0 (20/32)
intron_pos 743:0 (21/32)
intron_pos 777:2 (22/32)
intron_pos 838:0 (23/32)
intron_pos 893:2 (24/32)
intron_pos 1096:0 (25/32)
intron_pos 1131:0 (26/32)
intron_pos 1183:0 (27/32)
intron_pos 1210:0 (28/32)
intron_pos 1335:0 (29/32)
intron_pos 1407:1 (30/32)
intron_pos 1676:0 (31/32)
intron_pos 1779:2 (32/32)
BEGIN
1 MSLPLLECKY VTEEFVREGK SGSYGSKLPS SVPMLRFLYE LCWVLVRGEL PIQSCKAVLE
61 KVKFSDDPSK EELASCFADV VTQIAQDLTM SGDHRSRLTK LAKWLVESQT VPQRIFQERC
121 EEEFLWEAEM VKIKAQDLKG KEVRLNTRLL YQQTKFNLLR EESEGYAKLI TLLCRGSAGS
181 SHNASAATMG IIKSLIGHFD LDPNRVFDIV LDCFELEQDY DTFLNLIPIF PKSHASQILG
241 FKFQYYQRLE VNSPVPSGLY KLTALLVKKN FISLESIYAH LLPKDEEVFE DYNTYSAKRF
301 EEANNIGKIN LAATGKDLME DEKQGDFKVD LYAALDMETE AVAERIPELE NNQTLGLLDG
361 FLSVDDWNHA NIMFERLAPL NPVAHNHICD GLFRLIEKRI THAYRIARQT RFQNSSAGSE
421 KIAHAANTSA SKTGPDLKEV FQILVTVGPY LYRNTQLLQK ICRLLRVYYL SALDLVRSSD
481 GSSNQEGSAD EIKHLKEARF RVEEALGTCL LPSLQLIPAN PAVGHEIWEV MSLLPYEARY
541 RLYGEWEKDD ERNPLLLAAR QVAKLDTRWI LKRLAKENLK PLGRMVAKLA HANPMTVLRT
601 IVTQIEAYRD MIAPVVDAFK YLTQLEYDIL EYVVIERLVQ GGRAKLKDDG INLSDWLQSL
661 ASFWGHLCKK YPSMELRGLF QYLVNQLKRG QGIELVLLQE LIQQMANVQY TENLTEDQLD
721 AMAGSETLRY HATSFGMTRN NKALVKSSNR LRDSLLPNDE PKLAIPLLLL IAQHRSLVVV
781 NADAPYIKMV TEQFDRCHGI LLQYVDFLSS AVTPATAYAQ LVPSLEELVH TYHLEPEVAF
841 LVFRPVMRLF KCRRNGDVSW PLDSGESIDA DSDVSKSESS MILDVGTSEK AVTWSDVLDT
901 VRTMLPSKAW NSLSPDLYAT FWGLTLYDLH VPRSRYESEI SKQHAALKTL EEVADNSSSA
961 ITKRKKEKER IQESLDRLTG ELKKHEEHVA SVRRRLSREK DKWLSSCPDT LKINMEFLQR
1021 CIFPRCTFSM ADSVYCAMFV HMLHSLGTPY FNTVNHIDVL ICKTLQPMIC CCTEYEVGRL
1081 GRFLFETLKI AYHWKSAESI YESECGNMPG FAVYYRYPNS QRVTFGQFVK VHWKWCAKIT
1141 KLLIQCLESN EYMEIRNALI MLTKISGVFP VTRKTGYNIE KRVAKIKNDE REDLKVLATG
1201 VAAALSARKS SWVTDEEFGM GYLELKAPPV HTPKHTPSQN GLVGGESTGG RSTANQQPES
1261 GGKDQLSKTK IPDGRTENMP SKSDQGHPKS KGGNPSDAQP SMSKKPVDQK ETDESPRISD
1321 ENPVKAGSKY SEAELKPSSK RGASATSTNK STKQDFGKDD GKSGKAAGRT SAADNDVIYL
1381 GSRQASLTKA SPSTAGNGSL ATGSSKVKDD GAEVTDTQKQ STRTAHSPRH EISTSSRSSD
1441 RLQKRANAVE DSDRTSKRRK ADSEHKEHDS EARPSDRDRS AEARVDLNKT PSDDQSSQRD
1501 QDRAKDKGNE RQDRDHRERV ERSDKTRADD AVKARDKSME RYGRERSVER GLDKGTTRSY
1561 DRNKDERSKD DRSKLRHSEA SLEKAHGDDR SLSQGLPPPP PLPPNIVPHS MASKEEPERR
1621 AGVTRHSQRL SPRHDERERR RSEENTSVSV EESKRRRDDD FRDRKRDDRE TIILKGEERE
1681 REREREREKS IPLKDDFEAS KRRKIKRDQQ VSSAEPGEYS PMPHQSSLSM GMGPSSYEGR
1741 EQRKSSSSMI QHGGYPEEPS IRLLGKEASS KMARRDPDPM YDREWEEDKR QRAERKRRDR
1801 K
//