LOCUS RID51377.1 1165 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2190
PROTEIN_ID RID51377.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H02045"
/db_xref="Phytozome:Brara.H02045"
intron_pos 69:2 (1/21)
intron_pos 123:0 (2/21)
intron_pos 154:0 (3/21)
intron_pos 188:1 (4/21)
intron_pos 242:2 (5/21)
intron_pos 301:0 (6/21)
intron_pos 344:0 (7/21)
intron_pos 526:0 (8/21)
intron_pos 734:0 (9/21)
intron_pos 757:0 (10/21)
intron_pos 794:0 (11/21)
intron_pos 875:0 (12/21)
intron_pos 891:0 (13/21)
intron_pos 937:0 (14/21)
intron_pos 989:0 (15/21)
intron_pos 1010:0 (16/21)
intron_pos 1047:0 (17/21)
intron_pos 1055:0 (18/21)
intron_pos 1070:0 (19/21)
intron_pos 1098:0 (20/21)
intron_pos 1132:2 (21/21)
BEGIN
1 MAAATARTQA LSLLAAANNH GDLAVKLSSL RQVKEILLSL DPSLSAEIFP YLTELHSSRE
61 ILVRKSLLEI IEEVGLRMMD HSYALVTVLL VLARDEDPIV AKKAVSVGTA FYCSILEEMA
121 MQFHHRGKVD RWVGELWTWM VKFKDVVFST ALEPGSVGVK VLALKFMETF ILLFTPDASD
181 PENFSNEGSR QMFNISWLAG GHPILNSVTL MSEANRTFGI LQDLVQSAGR LPGALTVAVV
241 SCLAVVARKR PVHYNTVLSV LLDFHPNLVT VKGCHAASVQ YSIRTALLGF LRCTSSPMIE
301 SRDKLVRALR AMNASDVADQ AVRQVDKFIR NNERFARENW SGKSNQAISH PNSWDLSKKR
361 KMSQGEDDTI NGEAAPKRLR HNTNMHLTPQ VKISDSPHGP VSINGISPAN HPSDSEPTPV
421 EQMVSMIGAL LAEGDRGAAS LDILISQLHP DMLADIVITS MKHLPSSPPK LTTTLATPAD
481 IVDSVCSPTL LPQLPFDPTL PAGLSFADVP SLNSAVADPR RDPRRDPRRI DPRRSNSSVA
541 PTSLPVSEGK EPIPVQMDIS SLPSNPLSVP AVTAGASSSV HPTTIEHSQN KVVGSSVIKI
601 IDQPDCREDL LTAPSECVYP SKGIPVSPCR DDEGFRETKC RDDLASIPDF DQHSPLESGP
661 DFDLQPPAAS DATAEEESYR ELASVPSYVE LTTEQSKTVG KLALERIIES NRHVCGFDCN
721 KIRMPLIARL IAKIGAGNDV VAILREHISV DHREFKGHEL VLHVLYHLHS MANLDTDETS
781 SYSAVYENFL ITVARLFLDA LPASDKSFSR LFGEAPHLPD SAIKLLDELC STRHDPTGRE
841 ISDSERVTQG LGAVWSLILV RPNERKAFLA IALNCSVHSE EDIRAKAIRL VTNKLYHLTY
901 TSEHVEKFAT DMLLTAVNSE ADLSQTGFIA EGIKTEAKSQ ITSTSDSPSS RTSDTHSQQD
961 LQTSRDASVL SFAEAQRLIS LFFALCKKKP SLLRLVFEVY GKAPKTVIQA FHRHIPILIR
1021 ELGSSYKELL HIISDPPKGS ENLLTLAIDA FPTLVDVVME ILSKLVSRQI WRLPKLWPGF
1081 LKCVSQTQPH SFPVLLELPM PQLESIMKKF PDLRPSLTAY ANQPAIRASL PNSALSVLGL
1141 ENGQDSRSQM HPSDAASSIH GAALT
//