LOCUS RID51255.1 997 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2070
PROTEIN_ID RID51255.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01933"
/db_xref="Phytozome:Brara.H01933"
intron_pos 35:1 (1/24)
intron_pos 96:2 (2/24)
intron_pos 120:2 (3/24)
intron_pos 144:2 (4/24)
intron_pos 168:2 (5/24)
intron_pos 192:2 (6/24)
intron_pos 216:2 (7/24)
intron_pos 240:2 (8/24)
intron_pos 264:2 (9/24)
intron_pos 286:2 (10/24)
intron_pos 310:2 (11/24)
intron_pos 331:2 (12/24)
intron_pos 354:2 (13/24)
intron_pos 371:2 (14/24)
intron_pos 385:2 (15/24)
intron_pos 400:1 (16/24)
intron_pos 530:0 (17/24)
intron_pos 596:1 (18/24)
intron_pos 603:1 (19/24)
intron_pos 648:1 (20/24)
intron_pos 688:0 (21/24)
intron_pos 758:1 (22/24)
intron_pos 835:2 (23/24)
intron_pos 886:0 (24/24)
BEGIN
1 MGVVFSAFVL FFTISTSFFS TLTTSASPAL HPDELKALGE IATTLGIKRL NLSDGDPCLL
61 KTLKLGVVSN PDSDVENIIL CDCSFDNNMT CHITELTLKS ISFSGKLPPE LAKLKYLHKI
121 AFCRNYLSGS IPMEWASLPN LTFISLCANR LSGPLPRGLQ NFKSLTFLGV EANQFSGPIP
181 DELGNLTNLT VLELASNQFT GSLPSSLARL VNLDKFRISD NNFTGIIPEY IGNWSRLTRL
241 DIQASGLKGP FPDAVARLEN LTNLFISDMT GINTFPNISS QAIKDLVLRN VSMSGKIPSY
301 IWSKPNLRSL DLSFNKLTGE VLGINIIPKF TYLTGNMLSG EIKSGVYLNS RKNIDLSYNN
361 FSWPSSCQER SNINTYRSSS LKNTLTGLLP CAGPMTCKHY KRSLHINCGG ETVTVTNSTG
421 KITYEADNSD QVKAATNQHF KNWGISNTGD FMDDNKDDDT YIVSTSLTLP GDSPDLYKTA
481 RRSALSLVYY AFCLENGEYN LKLHFMEIQF SDKELYSRLG RRIFDVYVQG KLFLRDFNIR
541 QEANGTLKPV VKELKDVNVT DHKLEIWLYW AGKGTTLIPK RGNYGPLISA ISLCHSLEQH
601 CGVEKTKHHI NYPLIFGVTG PLVAIIFLAL GFYAHRKYRQ DKKKRERDLR AQGLQTVCFT
661 WRQLQAATNN FDEANKLGEG GFGSVFKGEL SDGTIIAVKK LSSKSCQGNR EFVNEIGMIS
721 GLNHPNLVKL YGCCVEKDQL LLVYEYMENN SLALALSGRS SLKLDWAARK KICVGIARGL
781 EFLHEGAAMR MIHRDIKTPN VLLDANLNAK ISDFGLARLH EEEHTHISTK VAGTIGYMAP
841 EYALMGHLTE KADVYSFGVV AMEIVSGKSN TTQKGSDDNA PLIKWAMTLQ QKGDIMEIVD
901 PKLEGEFNSL EAERMTRVAL VCTNATPSLR PLMSEAVKML EGEMEIPRIM SGPAVYGHDL
961 NFSKLMEMQE STSMSGYGLS PFNQESATSN STAEFSS
//