LOCUS RID51253.1 1013 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2068
PROTEIN_ID RID51253.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01931"
/db_xref="Phytozome:Brara.H01931"
intron_pos 39:1 (1/23)
intron_pos 97:2 (2/23)
intron_pos 121:2 (3/23)
intron_pos 144:2 (4/23)
intron_pos 168:2 (5/23)
intron_pos 192:2 (6/23)
intron_pos 216:2 (7/23)
intron_pos 240:2 (8/23)
intron_pos 264:2 (9/23)
intron_pos 288:2 (10/23)
intron_pos 312:2 (11/23)
intron_pos 335:2 (12/23)
intron_pos 357:2 (13/23)
intron_pos 378:2 (14/23)
intron_pos 393:2 (15/23)
intron_pos 408:1 (16/23)
intron_pos 538:0 (17/23)
intron_pos 603:1 (18/23)
intron_pos 652:1 (19/23)
intron_pos 692:0 (20/23)
intron_pos 762:1 (21/23)
intron_pos 841:2 (22/23)
intron_pos 892:0 (23/23)
BEGIN
1 MFADKKKKKD INIFVFSIFA IICFKSFSIN AIKLPQDEVD ALQQIATTLG SKYWKFDAES
61 CTVEKVGLTE TPPPLAEQVI ECECSPTNET DCHVVKIALK DHSLPGTLPP QIVKLPKLRE
121 IDLAYNYLNG TIPLEWFTTN LTLISLLVNR LSGEIPKELG NLTSLTFLNL ESNAFSGTIP
181 QELGNLVNLG TLMLSSNNLT GNLPASLSKL QNMTDFRIND LQLNGTIPTY TQNWKELERL
241 EIVASGLTGP IPSVISVLNN LKNLRISDIG GPVQPFPYLR NSTEISKLVL KNCNLAGQIP
301 DYLSNFKNLE TLDLSFNKLP GVIPSFAHAE KLRFLILTGN RLEGDVPPEL LRDGITVDLS
361 YNNLKWQSSE SRSCRPNMNL NLNLFQSTST KESSKVLPCI DDFKCPRYSS CLHVNCGGSD
421 LTLKQNKTKI LYQGDGEAEG GAAKYYLKHN SYWGFSSTGD YMDDNNFQNT RFTVFVPTSN
481 LSDLYKSARI APVSLTYFHA CLENGKYTVN LDFAEMRFTN DETYNRLGRR VFDIYIQEKL
541 VVKDFNIMEE AKGAQKPITK SFTVNVTNHF LAIRLSWAGK GTTRIPTRGV YGPLISAISI
601 VSDSKPCASP GSGMSLGAKI AIGLGSICLI IFILGVLWFF GCLPKCWQRR KDPNEEELPS
661 GTFTLRQIKF ATDDFNPANK IGEGGFGPVF KGVLSDGRVV AVKQLSSKSR QGNREFLNEI
721 GAISCLQHPN LVKLHGFCVE RSQLLLVYEY MENNSLAQAL FSPKHKQIPL DWPTRFKICC
781 GIAKGLAFLH EESPLKFVHR DIKATNILLD KDLTPKISDF GLARLDEEEN THVSTKVAGT
841 IGYMAPEYAL WGYLSFKADV YSYGVLVLEI VAGINNSSFM AAGDEVCLLE WAMECEESGD
901 LMQVVDERLR PEVDKKEAET LIKVALVCTS ASASDRPIMS EVVGMLEGHY PVPEPTPGTS
961 RKSGDIRFKA FKDVRKGMEE NSSKTQFSLN SYPSSSSDTH VAGQERKQDE SGT
//