LOCUS RID51212.1 852 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-2027
PROTEIN_ID RID51212.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01893"
/db_xref="Phytozome:Brara.H01893"
intron_pos 17:1 (1/12)
intron_pos 57:0 (2/12)
intron_pos 90:0 (3/12)
intron_pos 109:0 (4/12)
intron_pos 161:0 (5/12)
intron_pos 189:1 (6/12)
intron_pos 219:2 (7/12)
intron_pos 274:2 (8/12)
intron_pos 341:0 (9/12)
intron_pos 390:1 (10/12)
intron_pos 718:0 (11/12)
intron_pos 781:2 (12/12)
BEGIN
1 MRLSSAGFNP HPHPHEVTGE KRVLNSELWH ACAGPLVSLP PLGSRVVYFP QGHSEQVAAS
61 TNKEVDAHTP NYPSLQPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNAQE QKDSYLAAEL
121 GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LMARDLHDNE
181 WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RAHRPQTVMP
241 SSVLSSDSMH LGLLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM
301 RFRMLFETEE SSVRRYMGTI TGICDLDPAR WANSHWRSVK VGWDESTAGD RQPRVSLWEI
361 EPLTTFPMYP SPFPLRLKRP WPSGLPSFHG LKEDDMGMGM GMSSPLMWDR GLQSMNFQGM
421 GVNPWMQPRL DASGLLGMQN DAYQAMAAAA LQDMRGIDPA KAAASLLQFQ SPSGFSMQPP
481 SLVQPQMLQQ QLSQQHQQQL SQQQQQVVDN HNLSASSAAM SQSNTSLLQS MTPLCHQQSF
541 SDTNGGNNPI TQLHTLLSNF PQDESSQLLN LTRTNSAMTS SGWPSKRPAI DSSFQHSTAV
601 NNNQSVMEQL GQSHTSNVSP NAVSLPPFPS GQEENHSDPH SHLLFGVNID SSSLLIPNGM
661 SNLRSIGIEG GDSTTLPFTS STFNNEFSGT MTTPSSCIEE PGFLQPSENQ QSNTFVKVYK
721 SGSFGRSLDI TKFSSYNELR SELARMFGLE GQLEDPVRSG WQLVFVDREN DVLLLGDDPW
781 PEFVSSVWCI KILSPQEVQQ MGKRGLELLN SAPSSDNVDK VPSNGNCDDF GNRSDPRSLG
841 NGIASVGGSF NY
//