LOCUS RID51084.1 1335 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1899
PROTEIN_ID RID51084.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01773"
/db_xref="Phytozome:Brara.H01773"
intron_pos 21:2 (1/24)
intron_pos 114:0 (2/24)
intron_pos 189:0 (3/24)
intron_pos 255:0 (4/24)
intron_pos 406:2 (5/24)
intron_pos 452:0 (6/24)
intron_pos 478:1 (7/24)
intron_pos 558:0 (8/24)
intron_pos 659:2 (9/24)
intron_pos 697:0 (10/24)
intron_pos 750:0 (11/24)
intron_pos 783:1 (12/24)
intron_pos 819:2 (13/24)
intron_pos 850:0 (14/24)
intron_pos 891:2 (15/24)
intron_pos 941:2 (16/24)
intron_pos 966:0 (17/24)
intron_pos 1026:1 (18/24)
intron_pos 1079:1 (19/24)
intron_pos 1128:1 (20/24)
intron_pos 1206:1 (21/24)
intron_pos 1261:0 (22/24)
intron_pos 1278:2 (23/24)
intron_pos 1305:0 (24/24)
BEGIN
1 MPSLQLLQLT ERGRGLVASR RKSILLAAGV VAAGGAAVYL KSRISSRRLG SSRHCNGQSD
61 DDEALEKMTG NDKKTAKKKK GGGLKSLQVL TAILLSQMGK MGARDLLALV GTVIFRTALS
121 NRLAKVQGFL FRAAFLRRAP LFLRLITENI MLCFMLSTMH STSKYITGAL SLRFRKILTK
181 LIHSHYFENM VYYKISHVDG RITHPEQRIA SDVPRFSSEL SELIQDDLTA VTDGILYAWR
241 LCSYASPKYI FWILAYVLGA GTAIRNFSPS FGKLMSKEQQ LEGEYRQLHS RLRTHSESIA
301 FYGGETREES HIQQKFKNLV SHMSVVLHDH WWFGMIQDFL LKYLGATVAV ILIIEPFFSG
361 NLRPDDSTLG RAEMLSNIRY HTSVIISLFQ ALGTLSISSR RLSRLSGYAD RIHELMAVSR
421 ELSGDDKISF QRNRSRNYLS EANYVEFSGV KVVTPTGNVL VEDLTLRVEQ GSNLLITGPN
481 GSGKSSLFRV LGGLWPLVSG HIVKPGVGSD LNKEIFYVPQ RPYMAVGTLR DQLIYPLTSD
541 QESVPLTETG MVELLKNVDL EYLLDRYQPD REVNWGDELS LGEQQRLGMA RLFYHKPKFA
601 ILDECTSAVT TDMEERFAAK VRAMGTSCIT ISHRPALVAF HDVILSLDGE GGWNVHYKRD
661 DSVLLTDAGV DSVQISDTNR QNDAMVVQRA FAAARKESAK ANSKAQPYST QLIEKSPVVD
721 KSVVLPRFPQ PRTPPRALPL RVAAMLNTLI PTLFDKQGGQ LLLVACLVVS RTLISDRIAS
781 LNGTTVKYVL EQDKAAFVRL IGLSVLQSGA SSVIAPSLKH LTQRLALGWR IRLTQHLLRN
841 YLRNNAFYKV FHMSGNSIDA DQRLTRDLEK LTHDLSGLLT GMVKPSVDIL WFTWRMKLLT
901 GQRGVAILYT YMLLGLGFLR RVAPDFGDLA GEEQQLEGKF RFMHERLNTH AESIAFFGGG
961 AREKAMVDTK FRALLDHSLM LLKKKWVYGI LDDFVTKQLP NNVTWGLSLL YALEHKGDRA
1021 LVSTQGELAH ALRYLASVVS QSFMAFGDIL ELHKKFLELS GGINRIFELD EFLEASQSGA
1081 TSDNHRSRLD SQDRISFSEV DIITPAQKLM ASKLSCEIVS GKSLLVTGPN GSGKTSVFRV
1141 LRDIWPTVCG RLSKPSLDIK ELGSGNGIFF VPQRPYTCLG TLRDQIIYPL SKEEAEKRAA
1201 KLYTNGETSA EAGNILDVHL KTILENVRLV YLLERDESGW DATTNWEDIL SLGEQQRLGM
1261 ARLFFHRPKF GILDECTNAT SVDVEEQLYR VAKDMGVTFI TSSQRPALIP FHSLELRLID
1321 GEGNWELRSI EQTAE
//