LOCUS RID51020.1 1102 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1835
PROTEIN_ID RID51020.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01712"
/db_xref="Phytozome:Brara.H01712"
intron_pos 196:1 (1/4)
intron_pos 587:0 (2/4)
intron_pos 644:2 (3/4)
intron_pos 669:0 (4/4)
BEGIN
1 MDYYFSFTNL VAAAICFLVL LGTIFFYMKS RSHQRNQTAA SSLTLLAPPS SLPHNSKHHV
61 FPSFHGADVR KTFLSHVLKE FRSKGIDLFI DKDIERSKSI GPALIEAIRG SRIAIVLLSE
121 NYASSTWCLN ELVEIIKCTQ EFGQTVMPIF YQVNPTDIKK QKGYFGKVFR KTCKGKRKEE
181 IQRWKHALTQ VAQIEVCTIL FLNITGLMII PLSRETEAEM IDDIATDVSN KLNNSAPSSD
241 FDGLVGIESH MTKMGPLLQL DSDEVRKIGI LGPPGIGKTT IARCLFNQHS RDFQLSVFMD
301 NIKRKYVRLA CSDDYNVKLD LQKQFMSQLT NEPCIRIPHL GVAKDRLKDK KVLVVLDDVD
361 HLVQLEAMAN ETSWFGPGSR IIITTQDQKV LNASGIDHIY RVDLPSYDEA LQIFCMYAFG
421 HNYPKDGFET LACQVRNLVG RLPLGLRVMG SYFRGMSEQN WTEALPRLRS HLDRDGEIAN
481 ILKFSYDALC SEDKSLFLHV ACLFDYDEVD TVEACLASCF LNVKQGLRVL AEKSLISIES
541 RWIKMSELLV QLGRKIVREQ YVSEPWKRQF LNEAIDIGEV LSDDKADSRS VIGINLNEEI
601 TSCTSERAFE RLSNLQFLRI RSYRTNLRSI DYVSRKLKLL IWPIFNPNFL VKLEMPFSKL
661 EKLWEENKPL SNLKWMDLTN SSNLKELPNL STATNLQELD LSYCSRLEEL PDLSTATNLQ
721 KLELRHCSSL VELPYSIGNA VNLRELDLNN CSSLVKLPSS IGNAVNLKEM NLSHCSNLVE
781 IPSSIGNAVN LRELDLNNCS SLVKLPSSIG NAVNLKEMNL SHCSSLVELP SSMRNLGRLS
841 ELKLKECSKL EVVLTNINLE SLKELNLSGC SLLKIYHESS TDIQELDPWL WRKSCLQFLA
901 LRGMKKLVSL LPLPDSLLEL DAEDCESLER LDCLFPNPNI RLNFLNCFKL NQEARDLIIR
961 TPTNQYAVFP AGEVPMCFTY RSYGSSVTVN LNQNPLGTST KFKACFICAV EDEEDFQNSE
1021 SVFCSITSGG IALTAFFKIL HRFSPGHLYT FDVEVETEEV TSTELVFEFD LGYSDTNVKI
1081 KECGIFQLLE VPLLSFRDGD ED
//