LOCUS RID51018.1 1120 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1833
PROTEIN_ID RID51018.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01710"
/db_xref="Phytozome:Brara.H01710"
intron_pos 147:1 (1/4)
intron_pos 196:2 (2/4)
intron_pos 570:0 (3/4)
intron_pos 642:0 (4/4)
BEGIN
1 MDSYFSRTSV VAAAATISFL ALLGTMFFNR KSKSQQEDET MASSSTLTLL APQSSLPHNW
61 KHHVFPSFHG EDVRTNFLSH VLKELKSKAI DLFIDNDIER SKSIGPELIE AIKGSRIAIV
121 FLSKNYASST WCLNELVEIM TCRKEFVNPT HVKKQTGDFG KVFKKTCVGK TKDEIQRWKH
181 ALTEVAQIAG FHSSNWETEA KMIEVIAIDV SNKLNNFAPS SDFNGLIGME SYTTEMEPLL
241 QLDSNEVRKI GILGPLGIGK TTIARYLFNQ HSQDFQLSVF MDNIKRNYQA AAAFSDDYSV
301 MLDLQKQFMS QLTNEACIKV PHLGVVKDRL KDKKVLVVLD DVDQLIQLEA MAKETCWFGP
361 GSRIIITTQN QKILKASGIN HIYKVNLPSN DAALQMFCMY AFGQKDPKDG FTELACEVRS
421 LVGRLPLGLR VMGSYFRGMS EQDWIEAVPR LRTHLARGGE IARILEFSYD ALRDEDKSLF
481 LHIACFFHYE KVDIVEGYLE KCYLDVRHGL HVLAEKSLIS IDSGRTYMSN LLIQLGRKIM
541 REQSDSEPGN RQFLNDAIDV GEGLIDDKAG ISSVIGRDLD EKITCASERA FIRLSNLQFL
601 RTKRDGVNLQ SMNFISPKLR VLSSPMFHRT CFPSSFNPTF QPLNLKWMEL SYTNCLKELP
661 DFSTATNLYE LDLTHSSSLV KLSSPIGNAI NLQNLNLSHC SDLVEIPSSI ITNLKSLDFY
721 GYSSLVEVPF NIEEVIDSIY INLSYCSSMV EVPSSTENAI NLQELNLNDC SSLVEIPFSI
781 GNAFYLQKLN MSYCASLVEL PSSTGNTSNF EEHDLDHCRV ELPSSMRKLG GLSELELKEC
841 SKLEVLLASI NLESLGEVNL SDWSLLKNYP ENSTDVQETD PWIGRISGLR KLVQSGMEKL
901 ESLPPLPDSL WELDADNGVS LERLGSSFSN PDINLSFLNY LKLNQEEKDL IIQTPSNEYA
961 VFPGGEVPQC FTYRSSGSSL TVKLNQMPIG TSTKFKACIL CAGEDKKGLR EWERASVCCS
1021 ITTSGGIALS SCLKTIEQFL PGNLYTFEFE VETDEVTSTE LVFEFEVGYA DLIKKGKTLE
1081 IKECGIMLVN MIESFGNDNS SGAINGARES ADPYQLLYFI
//