LOCUS RID50987.1 1048 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1802
PROTEIN_ID RID50987.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01681"
/db_xref="Phytozome:Brara.H01681"
intron_pos 52:0 (1/24)
intron_pos 106:0 (2/24)
intron_pos 161:1 (3/24)
intron_pos 200:1 (4/24)
intron_pos 245:0 (5/24)
intron_pos 295:1 (6/24)
intron_pos 318:0 (7/24)
intron_pos 351:0 (8/24)
intron_pos 388:2 (9/24)
intron_pos 447:0 (10/24)
intron_pos 484:0 (11/24)
intron_pos 510:1 (12/24)
intron_pos 558:1 (13/24)
intron_pos 596:1 (14/24)
intron_pos 637:0 (15/24)
intron_pos 664:2 (16/24)
intron_pos 706:1 (17/24)
intron_pos 746:2 (18/24)
intron_pos 792:2 (19/24)
intron_pos 825:0 (20/24)
intron_pos 867:0 (21/24)
intron_pos 898:0 (22/24)
intron_pos 933:1 (23/24)
intron_pos 1009:0 (24/24)
BEGIN
1 MEVDTVTDSR IEKVNSLLKD IRIDYDSLSK PVDSLVSSIR EAIDAIPEGF KVTSELAPSF
61 VRDIGADKVE FTFKKPNGFS LCGSYSTRCM AKPEASVDLL LHLPKECFYE KDYMNHRYHA
121 KRCLYLCVLK KHLLASSSVE KVEWSTLQNE ARKPVLVVFP AKRVDNFPGF SVRIIPSAAS
181 LFDVAKLSMS RNNVRSVTAD GVAQPTPTYN SSILEDMFLE ENSELLKKTF SVWKELGDAL
241 ILLKIWARQR SSIYVHDCLN GFLISVILSY LATHGKINKS LNALDIFRVT LDFIATSKLW
301 ERGLFFPPQS DNPVSKEEKL QFKELFPVVI CDSSTLMNLA FRMTSVGFHE LRDEASSTLK
361 CMKLRDGGFE EAFMTKIDYP VRYDHCIRLH LKGKTAVSTS GFCLDKEYWR TYEQKVQTLL
421 EQGLGDRAKS IRVVWRNTNH DSYVESGFSV LDREPLFIGV SISSIENAFR TVDIGPDAEN
481 KTEALKFRKF WGEKSELRRF KDGRIAESTV WGTQQWTRHL IMKQIVEYIL KRHLSLSSDD
541 IVQLVDQLDF SLIYGDKDPI STSGNLLEAF EAFSQCLRGI KGIPLKVSSV QPLDSALRLT
601 SVFPPEPHPL ACGKIDAQKQ HRVMPSCIPT MEVMIQLEGS GNWPMDDLAI EKTKTAFLIQ
661 IAENLQTIKG IRSTATEDNV DVFMRGYAFR LRILHERGLS LVKREIGADP VKHVSSADKM
721 LFIRSQHASM INGLHGRFPI YASVARLAKR WVSAHLFSGC LAEEAIELLV AHVFLTPLPL
781 GVPSSRINGF LRFLRLLADY DWMFYPLIVD INNDFGRNDE KEINDNFMSS RKGYEEDRQN
841 ISSAMFLAAP YDKASEAWTT LSPNLSELKR LVAYARSSAN VLSKLILQEH NDSVQWECLF
901 RTPLNNYDAV VLLHREKLTY PHHLLFPSEL NQGKHVARGK ASKAFNPFLL PGDLKRSPEE
961 LKKKLMVDFE PTKCFMRGLH EEFGTLKPWY DHIGGDAIGL TWSKPNSKKR ERDEEEVEIN
1021 PVEMLKAVGE MGKGLVRDIY LLKSPRFL
//