LOCUS RID50772.1 886 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1587
PROTEIN_ID RID50772.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01479"
/db_xref="Phytozome:Brara.H01479"
intron_pos 37:0 (1/22)
intron_pos 70:2 (2/22)
intron_pos 111:0 (3/22)
intron_pos 131:0 (4/22)
intron_pos 168:0 (5/22)
intron_pos 190:0 (6/22)
intron_pos 230:2 (7/22)
intron_pos 269:0 (8/22)
intron_pos 294:0 (9/22)
intron_pos 347:0 (10/22)
intron_pos 381:0 (11/22)
intron_pos 415:0 (12/22)
intron_pos 462:0 (13/22)
intron_pos 497:0 (14/22)
intron_pos 571:0 (15/22)
intron_pos 609:0 (16/22)
intron_pos 681:0 (17/22)
intron_pos 701:0 (18/22)
intron_pos 739:0 (19/22)
intron_pos 767:2 (20/22)
intron_pos 804:0 (21/22)
intron_pos 863:2 (22/22)
BEGIN
1 MAPAPDPNSS VGGGGGAKRD QASTKVKAPK KKEEDLSEED LELQQNLELY VKRVQDPNPE
61 LQKAALESMS QEIRASTSSM TSVPMPLKFL RPYYGTLKDC HQKMAESDLK KLLADILSVL
121 ALTMSAEGER ESLGYRLAGS GGDIGSWGHE YVRNLAGEVA VEYTIRQVQE SSIMDLMDLV
181 RQIVAFHMKH NAETEAVDLL MEVEDLDPLL DHVGRTNFRR TCNYLTSAAK YRPWPDDMVA
241 LDIAYMIYMK FKAYPNALQI ALLLDNMQYV KKVFTSCTNL LRKKQFCYMI SRHGITFNLD
301 PEMVEDKDDR SMLQEIVNNT KLNEGYLTLA RDIDVMEAKR PEDIYKAHLL NVRSGPVVES
361 AKQNLAATFV NAFVNAGFGQ DKLMAGTSDS TSGSAGNWIF RNKDDGKTSA TASLGMIYLW
421 DVEGGLAQLD KYYDISDKPV RAGALLGVGI VNCGIKSDCD PALALIGEYT DNEDSSVRIG
481 AIMGIGIAYA GSQNDQIKSS LSPILNDEKA PLDVVAFAAL SLGMVYVGSC NDEVAQSIMF
541 ALMDRNSAEP GEALVRFLPL GLGLLYLGKQ ESVEATAEIS KTLCEKIRNY CKMTLLSCAY
601 AGTGNVLKVQ ELLAQCGEHP EKDTIHQGPA VLGVAMIAMS EELGRDMAIR SLEHVLQYGE
661 QNIRRAVPLA LGLLCISNPK MNVMDTLSRL SHDTDSEVAM TATISLGLIG AGTNNARIAG
721 MLRNLSSYNE QHARLLFCVR IAQGLLHMGK GLLTLNPFHS DRVLLSPTAL AGIVTLLHAC
781 LDMKSIILGK YHYVLYFLAL AMQPRMMLTV DENLKPISVP VRVGQTVDVV GQAGRPRTIT
841 GFQTYETPVL LAAGERAELA TDKYIPLSPI LEGFVILREN PNYREE
//