LOCUS RID50712.1 978 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1527
PROTEIN_ID RID50712.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01419"
/db_xref="Phytozome:Brara.H01419"
intron_pos 19:2 (1/19)
intron_pos 53:0 (2/19)
intron_pos 76:0 (3/19)
intron_pos 155:0 (4/19)
intron_pos 214:1 (5/19)
intron_pos 258:2 (6/19)
intron_pos 313:0 (7/19)
intron_pos 362:1 (8/19)
intron_pos 448:0 (9/19)
intron_pos 471:0 (10/19)
intron_pos 494:0 (11/19)
intron_pos 540:0 (12/19)
intron_pos 583:0 (13/19)
intron_pos 632:1 (14/19)
intron_pos 683:0 (15/19)
intron_pos 726:0 (16/19)
intron_pos 748:0 (17/19)
intron_pos 861:1 (18/19)
intron_pos 942:0 (19/19)
BEGIN
1 MSVSMRDLDP AFQGAGQKAG IEVWRIENFS PAPIPKSSIG KFFTGDSYIV LKTTALKTGA
61 LRHDIHYWLG KDTSQDEAGT AAVKTVELDA ALGGRAVQYR EVQGHETEKF LSYFKPCIIP
121 QEGGVASGFK HVEAEEHITR LFVCRGKHVV HVKEVPFARS SLNHDGIYIL DTKSKIFQFN
181 GSNSSIQERA KALEVVQYIK DTYHDGTCEV ATVEDGRLMA DAESGEFWGF FGGFAPLPRK
241 TANDEDKTYN SDITKLFCVE KGQANPVEGD SLKREMLDTS KCYILDCGLE VFVWMGRTTS
301 LDDRKVASGA AEEMIRSSER PKSQMIRIIE GFETVTFRSK FDTWTQETNT TVSEDGRGRV
361 AALLQRQGVN VRGLMKAAPP KEEPQAFIDC TGNLQVWRVN GQEKVLLQAA DHSKFYSGDC
421 YVFQYSYPGE EKEEVLIGTW FGKQSVEEER ASAVSMASKM VESMKFVPAQ ARIYEGKEPL
481 QFFVIMQSFI VFKGGISSGY KKYIAEKEVD EDTYNENGLA LFRIQGSGPE NMQAIQVDPV
541 ASSLNSSYCY ILHNDSSVFT WIGNLATSTD QELVERQLDL IKPNLQTRAQ KEGSESEQFW
601 ELLGGKTEYR SQKLTKEPES DPHLFSCSFT KDILKVTEIY NFTQDDLMTE DIFIVDCHSE
661 IFVWVGQEVA PKNKLQALTI GEKFIEKDSL LEKLSPEAPI YVIMEGGEPS FFTRFFTSWD
721 SSKSAMHGNS FQRKLRIVKN GGAPVAEKPK RRTPASYSGR ASVPDKSQQR TRSMSFSPER
781 VRVRGRSPAF NALAATFESQ NARNLSTPPP VVRKLYPRSV TPDSSKLAPK SSAIASRSAL
841 FEQRLKTPPQ EQPSVSKPPK GSPKTPESPA PESGSKGKEE KKENDKEEEE KSMSSRIGSL
901 TIQEDAKEGV EDEEDLPAHP YERLKTTSSD PVSDIDVTRR EAYLSPEEFK EKFGMTKEAF
961 YKLPKWKQNK FKMAVQLF
//