LOCUS RID50654.1 1481 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1468
PROTEIN_ID RID50654.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01364"
/db_xref="Phytozome:Brara.H01364"
intron_pos 82:2 (1/9)
intron_pos 108:0 (2/9)
intron_pos 147:0 (3/9)
intron_pos 200:2 (4/9)
intron_pos 446:0 (5/9)
intron_pos 475:2 (6/9)
intron_pos 618:0 (7/9)
intron_pos 689:0 (8/9)
intron_pos 1248:0 (9/9)
BEGIN
1 MDGQGNEPEV PNPTAENEQL ALAAETETET ENSNGGGDNP KEEEGLIEKA QKLMEHITNG
61 ANNPNPTVLH ALSHLLESQE SLFIKENGFY SNGRGSHISG KLCKLIKEND EFFELISSTF
121 LSENTYSTAV KAASARLLMN WLLTWTHPYI FDDAVTENFK KWVLEEAVKF PGEHSGSSEA
181 SDSEMLKTYS TGLLAHSLTS RGQLVEDVLT SGLSAKLMHY LRVRVIGEAS TSRRDALHTT
241 EAKHVSLKTK EDGRSRVRRV VDTAEGDHVL EADAGRETDV LSEGELEIDG RDRCNVPAVF
301 DGKMKPGDGN TGRDDPSRNR LSRSKSRARG KVNEGATDTD SLLASPTSGR LGVRDRDQSK
361 NLDVRNAEDG TKWLGKMKSG IMEIEREKND ECFQDCVIGT KNITDVVKRA VGAAETEARA
421 ANAPDEAVKA AGDAAAELVK TAALEEFKSS GSEEAAVAAA RRAATTVIDA AEVSRNHTCV
481 TSDQAAGTSS VETDAIVDVG EVSLPDIESL AQLQEKYCIQ CLEILGEYVE VLGPVLHEKG
541 VDVCITLLER TSQLGDSFTL SPLLPDVMKL ICALAAHRKF AAMFVDRGGL QKLLAVPRVT
601 ETFYGLSSCL YTIGSLQGIM ERVCALPSDL IHQVVKLAIE LLDCSQDQAR KNSALFFAAA
661 FVFRAILDAF DAHNSLQKLL AILKDAASAS GLGETASALL KEAQLNPLPS LAPPSSIAYS
721 ATQEMSAPVA QVQWPSGRAS GGFFNSKPEV CAHDEDPNSK CNAALSAKKK HLASSTQETS
781 TPVAQQQWPS GRTNCGFFPS KPKVNAHEED PSSRGNAAPS AKKKQLAFSP SFGSQSRKQS
841 LCQDAQPQST QRINSSSNSD PACGDTSEAV AEKNDLDADA QFKTPTFPRK RKLSELRETE
901 MSTSSKRINL GELGPRTPAC PTSASLRRSS TIAEASGFQT PASALDVNQS GSSRLGQMTP
961 ASQLRLPSDP QPSERLSLDS LVVQYLKHQH RQCRAPITTL PPVSLLHPHV CPEPKRLLEA
1021 PLNITDRLGT RELQSYYSGV HGNRRDRQFV FSRFKSWRSY RDETALFTSI SLLGGTNHLA
1081 VGSHAGEIKI FDASSGNMLE SVSGHQAPVT LVQSYVSGDT QLLLSSSYSD VQLWDASDIT
1141 VGSKHSFDGC KAAKFSNSGS LIAALSSEGP TKDVLLYNVE TGSLSEKFTD PDTSSRTSPY
1201 TLVHFNPCDS LILWNGHLWD RRVPNSCKRF DQFTDYGGGG FHPSRNEVII NSEVWDLRNM
1261 NTRLIRSVPS LDQTAITFNS RGDVIYAMLR RNIEDVMSAV NTRRAKHPLF AAFRTLDAVN
1321 YSDIATIPVD RCLLDFATEP TDSFLGLITM EDQDDMFSSA RMYEIGRRRP TDDDSDPDDD
1381 GETEDEDEDD EDDEDDLDRI LGLAGDDSDS GDDDMSSDDN EDNSASDFDD DDGGMFFDGG
1441 IMEIVSEGDD EDDNGDSDGE DSDDDGDSIS SGEEDFLNSI H
//