LOCUS RID50338.1 895 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1153
PROTEIN_ID RID50338.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01075"
/db_xref="Phytozome:Brara.H01075"
intron_pos 21:2 (1/13)
intron_pos 39:2 (2/13)
intron_pos 63:1 (3/13)
intron_pos 100:1 (4/13)
intron_pos 251:0 (5/13)
intron_pos 288:0 (6/13)
intron_pos 529:0 (7/13)
intron_pos 562:2 (8/13)
intron_pos 625:0 (9/13)
intron_pos 657:2 (10/13)
intron_pos 700:0 (11/13)
intron_pos 755:1 (12/13)
intron_pos 795:0 (13/13)
BEGIN
1 MGDDGATHLE KMGRELKCPI CLSLFNSAVS LTCNHVFCNA CIVKSMKVDA TCPVCKVPFH
61 RREIRGAPHM DSLVSIYKNM EVASGVPMFV SQTKPSSPSE KEKHVGDGSI EKENGKKRQG
121 SSKGRTSKKR GSRKTKETDV DSSGPIVMKP SSQTNKRVQL SQNHSSQSLT ISTESAEKLK
181 DYTDRTVIRL NEHPSLDKEE NLAPLFWLRD EVDGESLSQP TESDQLLDVT PVDVPSFSDL
241 KDSDHDTPSK AVEQEKPNPG DMFDSEMFEW TQRPCSPEIL PSPVKAKDLG KGEIDLPQRK
301 LSKDASSNKK RKAGSARNKV VNVRVGVSKE DHIASSAGEN IGEKQETGGT SGKSTRRDGN
361 VKAKRATRNK GQTSGVQSGS VEAEGKQGTK KKRSSVKVSA EQPVAVSNEL SVGTENVGKG
421 DQEPEKQSPA EKPSLKKRRK SQTGDLSGRS EKKTSEKRSK LDSCATPSRV TQSRGKKILS
481 DELNQAGDRQ DSTNKKPSLG GSVHLRRCSG PPTNKFTCAF CQSSDETEAS GKMSHYHKGE
541 PVSADFSGGS NVIHVHKNCA EWAPNVYFNR RTAVNLDVEL TRSQRITCSC CGLKGAALGC
601 YNESCKNSFH VTCAKLIPEC RWDDKNFVML CPLDASSKLP CEEASPKGRK RKRAPEGPLQ
661 AQTNQVSEKS DISELQRKPF HGLPKKMVLC CSGLTDEENS VISEFAELSG VTVSRKWERR
721 VTHVIASINE NGACKRTLKF MMGILEGKWI LSIDWIKACM KNGEYVSEEP YEISIDVHGT
781 RQGPYIGRQR ALNKEPKLFN GLKFYIMGDF EVAYKGYLQD MIVAAGGTIL CRRPVCNDDN
841 EASTIIVFNV EPSKKKTLTE RRSDAEALAR SVNARAASSS WVLDSIAGCQ VLELI
//