LOCUS RID50311.1 1079 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-1126
PROTEIN_ID RID50311.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H01050"
/db_xref="Phytozome:Brara.H01050"
intron_pos 89:0 (1/22)
intron_pos 101:1 (2/22)
intron_pos 153:0 (3/22)
intron_pos 248:0 (4/22)
intron_pos 314:0 (5/22)
intron_pos 335:2 (6/22)
intron_pos 363:2 (7/22)
intron_pos 404:0 (8/22)
intron_pos 419:0 (9/22)
intron_pos 465:0 (10/22)
intron_pos 489:1 (11/22)
intron_pos 515:0 (12/22)
intron_pos 551:0 (13/22)
intron_pos 590:0 (14/22)
intron_pos 642:0 (15/22)
intron_pos 677:0 (16/22)
intron_pos 719:0 (17/22)
intron_pos 745:0 (18/22)
intron_pos 777:0 (19/22)
intron_pos 804:0 (20/22)
intron_pos 904:0 (21/22)
intron_pos 1045:0 (22/22)
BEGIN
1 MDYKQNQTYI DADDKEITQE DDDEEITQED AWTVISAYFE EKGLVRQQLD SFDEFIQNTM
61 QEIVDESSDV EIRAESQHNP GHQPDFAERN YNISFGQIYL KTATLFPKAA RLRNLTYSAP
121 LYVDVCKTVI MKGHDGEEIT ETQDFTKVFI GKVPIMLRST YCTLHQNSEK DLTELGECPF
181 DQGGYFIING SEKVLIAQEK MSSNHVYVFK KRQPNKYSYV AEVRSMAENQ NRPPSTMFVH
241 MLSGSKGGSS GQFIRCTLPY IKKEIPIIIV FRALGFVADK DILERICYEF GDTQMMELLR
301 PSLEEAFVIQ SQQVALDYIG KRGAPVGTSK EKRIKYARDI LQKEMFPHIG VGEFETPKAY
361 YFGLIIHRLL RCALGRNPED DRDHYGNRRL DLAGPLLGGL FRMLFRKLTR DVRSYVQKCV
421 DNGKEVNLHF AIKAKTITSG LKYALATGNW GQANAAGTRA GVSQVLNRLT YASTLSHLRR
481 LNSPIGREGK LAKPRQLHNS QWGMMCPAET PEGQACGLVK NLALMVYVTV GSAAYPILIF
541 LEEWGLETLE EISPADIPQA TKIFVNGKWV GIHRIPDMLV RTLRLLRRRN DIKTEVSVVR
601 DIRLKELRIY TDYGRCSRPL FIVDNQRLLI KKKDIYSLQQ RESAEEDGWH HLLVKGFIEY
661 VDTEEEETTM ISMTINDLVQ ARLRPDEAYS DTYTHCEIHP SLILGVCASI IPFPDHNQSP
721 RNTYQSAMGK QAMGIYVTNY QFRMDTLAYV LYYPQKPLVT TRAMEHLHFR QLPAGIAQGK
781 TSRYTRRDHS LSLRHSESGM VDQVLLTTNA DGLKFVKVRV RSVRIPQIGD KFSSRHGQKG
841 TVGMTYTQDD MPWTIEGVTP DIIVNPHAIP SRMTIGQLIE CIMGKVAAQM GKEGDATPFT
901 DVTVDNISKA LHECGYQMRG FERMYNGHTG RPLPAMIFIG PTYYQRLKHM VDDKIHSRGR
961 GPVQILTRQP AEGRSRDGGL RFGEMERDCM IAHGAASFLK ERLFDQSDAY RVHVCETCGL
1021 IAIANLKNNT FECKGCKNTT DIVQVHIPYA CKLLFQELMS MAIAPRMLTK DLKSAKGRK
//