LOCUS RID50177.1 792 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-992
PROTEIN_ID RID50177.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00922"
/db_xref="Phytozome:Brara.H00922"
intron_pos 23:0 (1/23)
intron_pos 91:0 (2/23)
intron_pos 103:0 (3/23)
intron_pos 140:2 (4/23)
intron_pos 156:0 (5/23)
intron_pos 171:2 (6/23)
intron_pos 207:2 (7/23)
intron_pos 233:0 (8/23)
intron_pos 257:1 (9/23)
intron_pos 306:0 (10/23)
intron_pos 334:2 (11/23)
intron_pos 381:1 (12/23)
intron_pos 428:0 (13/23)
intron_pos 445:0 (14/23)
intron_pos 466:1 (15/23)
intron_pos 514:1 (16/23)
intron_pos 537:0 (17/23)
intron_pos 556:2 (18/23)
intron_pos 609:0 (19/23)
intron_pos 626:2 (20/23)
intron_pos 659:2 (21/23)
intron_pos 698:0 (22/23)
intron_pos 739:0 (23/23)
BEGIN
1 MEDDGGERSS FVVGLIENRA KEVGMAAFDL RSASLHLSQY IETSSSYQNT NTLLRFYDPC
61 VIIVPPNKLA ADGMVGVSEL VDRCYSTVRK VVFARGCFDD TKGAVLIQNL AAEEPLALGL
121 DTYYKQHYLS LAAAAATIKW IEAEKGVIVT NHSLTVTFNG SFSHMNIDAT SVENLEIIDP
181 FHNSLLGTSN KKRSLFQMFK TTKTVGGTRL LRANLLQPLK DIKTINTRLN CLDELMSNEE
241 LFYGLSQVLR KFPKETDRVL CHFCYKPKKV TEAVLGFDNT RRSQNMISSI ILLKTALDAL
301 PLLAMAIKDA KCFLLANIYK TVCENDRYAS IRKRVGEVID DDVLHARVPF VARSQQCFAL
361 KAGIDGFLDM ARRTFCDTSE AIHNLARKYR EEFNLPNLKL PFNNRQGFFF RISQKEVQGK
421 LPSKFTQVVK HGKNIHCSSL ELASLNVRNK SAAGECFVRT EICLEALMDA IREDVSALTL
481 LAEVLCLLDM IVNSFAHSIS TKPGYRYSRP ELTDSGPLAI DAGRHPILES IHNDFVPNSI
541 FMSEASNMLV VMGPNMSGKS TYLQQVCLVV ILAQIGCYVP ARFATMRVVD RIFTRMGTMD
601 NLESNSSTFM TEMRETAFIM QNVSNRSLIV MDELGRATSS SDGLAMAWSC CEHLLSLKAY
661 TVFATHMDSL AELATIYPNV KVLHFYVDIR DNRLDFKFQL RDGTLHVPHY GLLLAEVAGL
721 PNTVIETART ITSKITDKEL KRIELNCEKH HEMHRIYRVA QKLICLKYSK QKEDSIRQAL
781 QNLKDSFTEG RL
//