LOCUS RID49658.1 1057 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-473
PROTEIN_ID RID49658.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00443"
/db_xref="Phytozome:Brara.H00443"
intron_pos 68:1 (1/16)
intron_pos 101:0 (2/16)
intron_pos 162:0 (3/16)
intron_pos 552:0 (4/16)
intron_pos 609:2 (5/16)
intron_pos 690:0 (6/16)
intron_pos 721:0 (7/16)
intron_pos 768:0 (8/16)
intron_pos 799:0 (9/16)
intron_pos 863:1 (10/16)
intron_pos 892:0 (11/16)
intron_pos 921:2 (12/16)
intron_pos 939:0 (13/16)
intron_pos 958:0 (14/16)
intron_pos 1001:0 (15/16)
intron_pos 1026:0 (16/16)
BEGIN
1 MAAENRKDRG LSSEVSIPSG LNRIKTRLAP KPDESALTVP KPPPPFYNRK PKSIAPRREH
61 GKTTSKQERN KGKKLSRWLA SYKPKYSVNL HKGYGCSTSE DAKSKVNNSR KDEETMVKLS
121 ETNLSSCKVP SIGIKSFSHE LGPRGGVQTS HPRPHSYNDL KELLGSLHSR FDVAKEIVDK
181 KLDDFVIDVE ENMEKMDPSC PEDRETAEEL LKLAQTCIEM TSAQLRATCE SIVQDLTKKM
241 KQCQAGLVKW FVSQLLFILT HCTRVVMFQK ETEPIDESSF RKFKECLENI PALETNWVST
301 SRVNEAGKKF KKQDKESLES EATLGFGMPD DQSNNAAREG YGASKQGSRF NSKVVEQRSY
361 LSNEYQDKMP NDPSGKELGG WDSVICRICE EEVTLSHLEP HSYICAYADK CEINCLDVDE
421 RLLKLEEILE QIIDSRSSNS FHPQAGGLEN SVLQKSGVAS EGCSPKVNEW RNKGVEGMFE
481 DLHEMDTAFI DESNTFPINL KSHVGAKFCH HGTSSSTGSI TSVSSTNTPR TSHFDSYWLE
541 RHSPEQEDLQ LMMDLSDIAR CGASTDLSKE GSCDYLLACM QDIQAVLKQS KLKALVIDTF
601 GGRIEKLLCE KYMYACDLIG DKSSTGNVKE SESVSEHASQ GSAMTTPHFA QKERTSIDDF
661 EIIKPISRGA FGKVFLARKR TTGDFFAIKV LKKLDMIRKN DFERILEERN ILITVRYPFV
721 VRFFYSFTCS DNLYLVMEYL NGGDLYSLLQ KVGCLDDDIA RIYIAELVLA LEYLHSLNIV
781 HRDIKPDNLL IAHDGHIKLT DFGLSKIGLI NNTIDLSGPE SEASPRKSSR HFQKSKEEER
841 IRHSAVGTPD YLAPEILLGT EHGYAADWWS VGIILFELIT GIPPFTAARP EIIFDNILNG
901 KMPWPDVPGQ MSYEAQDLIN RFLVHEPEKR LGANGAAEVK SHPFFRGVDW ENLAMQKAAF
961 VPQPESIHDT SYFVSRFGEK SCSDSGTDND NESYPNSGDE LDECTNLADF DSPPYYLSFI
1021 NFSFKNLSQL ASINHDVLLQ KDPAKGGGAS PFNSHGT
//