LOCUS RID49454.1 998 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-269
PROTEIN_ID RID49454.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00253"
/db_xref="Phytozome:Brara.H00253"
intron_pos 94:1 (1/22)
intron_pos 174:0 (2/22)
intron_pos 221:0 (3/22)
intron_pos 270:0 (4/22)
intron_pos 321:0 (5/22)
intron_pos 364:1 (6/22)
intron_pos 396:2 (7/22)
intron_pos 437:0 (8/22)
intron_pos 457:0 (9/22)
intron_pos 474:0 (10/22)
intron_pos 506:0 (11/22)
intron_pos 540:0 (12/22)
intron_pos 581:0 (13/22)
intron_pos 629:0 (14/22)
intron_pos 653:0 (15/22)
intron_pos 678:1 (16/22)
intron_pos 726:0 (17/22)
intron_pos 762:1 (18/22)
intron_pos 825:0 (19/22)
intron_pos 855:0 (20/22)
intron_pos 916:0 (21/22)
intron_pos 976:0 (22/22)
BEGIN
1 MRLGNVVYLL ISSSTKPPSR VYSSNLRRHF LSHFRFSSSS VAVMPGSEPS EIQWPARRVR
61 DTYFDFFKGK GHKFWPSSPV VPHNDPTLLF ANAGMNQYKP IFLGTADPNT ELSKLTRACN
121 TQKCIRAGGK HNDLDDVGKD TYHHTFFEML GNWSFGDYFK KEAIEWAWEL LTKVYGLPTD
181 RIYATYFGGD EKAGLQPDNE ARDIWLKFLP PGRVLPFGCT DNFWEMGDTG PCGPCTEIHY
241 DRVGNRDAAS LVNNDDPTCL EIWNLVFIQF NRESDGSLKP LPAKHVDTGM GFERLTSVLQ
301 NKMSNYDTDV FMPIFDDIQK ATGARPYSGK VGLEDVDRVD MAYRVVADHI RTLSFAIADG
361 SRPGNEGREY VLRRILRRAV RYGKEILKAE EGFFNGLVSS VIRVMGDTFT ELKEHEKKIT
421 EIIKEEEASF CKTLAKGIEK FRKAGQAVQG NTLSGEDAFV LWDTFGFPLD LTQLMAEERG
481 LLVDVDGFNK AMEEARERSR SAQNKQAGGA IVMDADATST LHKTGVLATD DSSKYIWFQD
541 HESEVKAIYT GSAFLESSAA GDNVGIVLAS TSFYAEQGGQ IFDTGLIEGS FGTFNVCNVQ
601 IFGGFVLHIG YLSKETGEVS VGDKVTCKVD YERRKLIAPN HTCTHMLNFA LKEVLGDHID
661 QKGSIVLPEK LRFDFSHGKP VDPEDLRKIE SIVNKQIKDE LDVFSKEAVL SEAKRIKGLR
721 AVFGEVYPDP VRVVSIGRQV EDLLADPEND EWSSLSSEFC GGTHITNTRE AKAFALLSEE
781 GIAKGIRRVT AVTTECAFDA LNEASSLEKE VEDASKAEGN ALEKKAAALK SRVDSAIIPA
841 AKKADIRAKI ALLQNEVRKA QKKIAEQNLK KSVKVATEAA ESAASDGKTF CIIQLDVGLD
901 AAAVREAVSK VMEKKGMSIM VFSTDETTNK AVVCAGVPDK SDKFKQLDVT EWLTTALGPL
961 KGRCGKGKSG LASGQGTDAS QVKAALDLAA SFASMKLN
//