LOCUS RID49411.1 983 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-226
PROTEIN_ID RID49411.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00212"
/db_xref="Phytozome:Brara.H00212"
intron_pos 83:0 (1/13)
intron_pos 141:0 (2/13)
intron_pos 160:0 (3/13)
intron_pos 226:1 (4/13)
intron_pos 260:0 (5/13)
intron_pos 289:0 (6/13)
intron_pos 333:0 (7/13)
intron_pos 381:0 (8/13)
intron_pos 424:0 (9/13)
intron_pos 689:0 (10/13)
intron_pos 877:0 (11/13)
intron_pos 912:0 (12/13)
intron_pos 983:2 (13/13)
BEGIN
1 MNAEKMDERR RTSRKKSSVA AAVRAKIPRS ALRKINCQKL LTSQYILAKV FRKDGPSLGF
61 QFDHLPPSSS SVDQQRVGRK RKVSEQHTSQ DDCVVVKKKQ YGIGKGLMTA WRVMNPNSHE
121 RATLAQSNPK KTKTQLASIL KQKQKKKSTE KKRTSINTET TEELNKDETV GFSEKCELGE
181 VFKETCQTMS ILVDDEELER QEGLVNPPLT CSCHTATCGS CFLCKDLLPK FPPSSVGMRL
241 PFALHPWNSS PESVKKLFKV VHFLYTYSVT LDICPFTIDE FTRAFHDKDS LLLGKIHLSL
301 LKLLLVDVET ELQRGSFSTL SISCKFLALL QSVESQIRIL DMWKDSLNSL TWAEILRQIL
361 VAAGFGSVKR AAGQSEELSK ERRLMKKYGL RLGTLKGELF RMLNEQGGKN GLKISELANA
421 AVEVAALNLA TASEEERECS ICSTLASDIT LFEKISESTY RARVSCFSED HESDSGESGS
481 VDDDEESGDE MGRVSESFVF RKAKRRKHRS KMLEVCSEID ESHPGEAWLL GLMEGEYSDL
541 SIEEKLDVFI ALIDLLSSGS TIRMEDLPRA MVDCVPSIYS HGSGGKIKRA SSSNHPRVSW
601 VHGGERIEKL SKSSDSHPVD SSSIVGADFA KLAGDNVHPM QSVYLGSDRR FNRYWLFLGP
661 CNANDPGHRC VYFESSEDGH WEVISHKEAL RALLSVLDDR GRREARLIES LEKRESFLCQ
721 AMLRRIDHVV REDSSSSPVS DIDNNNLCLN EIANDQQAAI VFEKRGNSLL WSLVQEFDEW
781 IWDKYYLNLN AVKHSRRSYL DSLTRCKSCH DLYWRDEKHC KICHATFELD IDLEERYAIH
841 EATCSRKNEE TSDSFPDHKV LSSQLQSLKA AVYAIESAMP EDALIGAWKK SAHRLWAKRL
901 RRSSTLSEIT QVIGDFVGAI NEDWLWHFGE EDGEIITSFP SMPRTTSAIA LWLVKLDTLI
961 ASYVVEKAPQ PEGNQLNRTR KHK
//