LOCUS RID49195.1 798 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010635-10
PROTEIN_ID RID49195.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 23189089)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A8"
protein /locus_tag="BRARA_H00010"
/db_xref="Phytozome:Brara.H00010"
intron_pos 37:1 (1/14)
intron_pos 86:1 (2/14)
intron_pos 93:2 (3/14)
intron_pos 117:2 (4/14)
intron_pos 139:2 (5/14)
intron_pos 161:2 (6/14)
intron_pos 176:2 (7/14)
intron_pos 197:1 (8/14)
intron_pos 324:0 (9/14)
intron_pos 390:1 (10/14)
intron_pos 443:1 (11/14)
intron_pos 483:0 (12/14)
intron_pos 553:1 (13/14)
intron_pos 634:0 (14/14)
BEGIN
1 MPTCLHLTVW FILCIFGSIH LVRSQNRTGA TTDPDEARAL NSIFAAWGKQ APRDWNISGQ
61 LCSGVAIGEN ITIDDKAYNP LIKCDYMTSL SVLDLSFNKL HGPIPASLFN LSQLTHLFLG
121 NNTLNGSLPT QKSQTLSNID VSYNDLSGIP PSWVNLPNLQ LNLVANNFTL ESLDNRVLPG
181 LNCLQKNFPC NRGKALYSDF AINCGGQQIR SASGEVFERE DGALGPASFV VSDEQRWGAS
241 NVGLFGGSSN VYIVTLLSQF INTLDSELFQ SARLSASSLR YYGLGLENGG YTVTLQFAEI
301 QIIGSSSNTW RGIGRRRFDI YVQGRLVERD FDIRRTANDS IVRAVEREYK VNVSENYIEI
361 HLFWAGKGTC CIPIQGAYGP LISAVSAKPD FIPTVANKPP SKGNNRTGTI LGVIVGLGLL
421 SIIAGVVILI IRKRRKRYTD DEEILNMDVK PYTFSYSELK TATQDFNPSN KLGEGGFGPV
481 YKGNLNDGRE VAVKQLSVGS RQGKGHFVAE IVAISTVMHR NLVKLYGCCY EGDHRLLVYE
541 YLPNGSLDQA LFGGDKKTLH LDWPTRFEIC MGVARGLAYL HEEGSVRIVH RDVKASNILL
601 DSNLVPKVSD FGLAKLYDDK KTHISTKVAG TVYYAMRGHL TEKTDVYAFG IVVLELVSGR
661 GNADESLEGE KRYLLEWAWN LHEKSHQVEL IDRELTEFNV EEVKRMIGIA LLCTQASHAV
721 RPPMSRVVAM LSGDVEVSEV TSKPIYLPDW RFDDTTRSSF SAFQTKDTGA SGSYSTSFVT
781 PAENDFKPML GVKINEGR
//