LOCUS RID46478.1 1449 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-3363
PROTEIN_ID RID46478.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I03135"
/db_xref="Phytozome:Brara.I03135"
intron_pos 28:0 (1/18)
intron_pos 131:1 (2/18)
intron_pos 173:0 (3/18)
intron_pos 287:0 (4/18)
intron_pos 456:0 (5/18)
intron_pos 514:0 (6/18)
intron_pos 576:1 (7/18)
intron_pos 609:2 (8/18)
intron_pos 712:0 (9/18)
intron_pos 744:2 (10/18)
intron_pos 786:2 (11/18)
intron_pos 882:0 (12/18)
intron_pos 916:0 (13/18)
intron_pos 938:0 (14/18)
intron_pos 1042:1 (15/18)
intron_pos 1084:0 (16/18)
intron_pos 1197:0 (17/18)
intron_pos 1366:0 (18/18)
BEGIN
1 MAYDQSLHSP DNPHFFQPLL PGFHTHLNIP VAFFLKHVQG SNDQIKTAKL TTDASAKTWL
61 VKVDGVRLTD GWEDFAVGHD LRIGDITIFR HEGEMVFHVT AFGPSCCDIQ YTSASSHSIN
121 DDSQDQTNNA GNSSGEKRKR VKKNPRTKED SSSDHSQFVA HVSPSSLSSD RLYIPTGFAR
181 SNGLDNMSGK EIIVLLNEEG RSWSLDMTCN KVGMQTFVRP GWRRFCAENG MKKGHHYTFK
241 LVRRSAPLII RLSHAEHEPE PATESSLNHS YYVGSVSSNS LSTDKLYLQR HFVTANGLEK
301 GLSEITLKNE WGGSWILGFR HYEPQNHTYL GPGWKTFCQV NGIKAEDSFM FKLVETGDKP
361 VLLLCTSNRG KTPLDCSEDR DDVDSLSSDT SSEDDSKEES QESDKESIED ADRSQQCIVM
421 EKENNSLRCI CSSPYSKHRF VRLSLTQSAL KTSVLYLPLA FTRMNCINKP IKIMLLGKDG
481 VKKQVVDLLK NKSTGAMRFG KGWREFCDAH GVKAWAFGSQ SNFGFVHLGL SFSDLSKSAL
541 FSLYESLVWD RFRFYRIRVR ISKSLKNRFF DLKVPGPVET ATQEDRLVEK LKPELSNRTE
601 KVYPFIERRY IIMRTSKGPM NPPELLCDLA KINETMSISE LCLPELSREL IISAVIIVSL
661 AQKVIISNPK TSQRTVVCGC GKSPAVSKRP TIENGGASGG EPEQSAHLAG QHMSSQHRWR
721 NEMEKVWMEE EAVSGEDLRT QSLESRSHST KEHAERRSSG KEYEERRTRL TLLSGNPQIS
781 GQHKRRTLEP KRFETVAVMV ETNNAAVASE MNGAAVAAEM NGTAAAMERE ADLKRGIKGD
841 GRRRRRRARS LPASTKLRRN GASISVAGRD ELGRTSLHKY LQRLFTKING SKKQRNVILL
901 DRHGFLDKTI KFLEKPLLPG FHTYLVLLTL FLCSKHVNIP VAFFSKHVEG SNDHIKTAKL
961 RTDASAKTWL VEMDGLKLTD GWEDFAVAHD LRIGDIIIFR HEGKMVFHVT AFGPSLCEFQ
1021 YTSASSHNIN DVSDDDHTNK TGNSSGEKRK RVKKNPRTKE ESSSDHSHFV AHVTPSSLSC
1081 DRLYVPKGFA MSNGLDNMSG KEIVLLNEEG KSWNLNITYN ESGMHTFVRP GWRRFCAENG
1141 ISQGHHCTFE LVPKSAPPVL RLSRAEHVPK PAPESSLHHS YYVGSVSSNS LRIDKLYLQM
1201 KFVTANGMKK GFSEIILKNE WGGRWSVRLR HYASSNHTYL GPGWKTFCQV NGIKAGDPFM
1261 FKLVETGDKP VLLLCSSNRG ETPLECSEDS DDVNSLSSDT SSGDDSREES QESEEESLQD
1321 DSSSKDCVEM EKRKSSLRCK CSSSYSKHRF VRLTLTQNAL KTSVQHLPLG FTRVNGINRS
1381 RKIMLLGKDG VKKWVVDLLK NKSTGAMRIR KGWRELCDAH GVKVGQSFLL ELIWEDKEAI
1441 PVLKFCTKL
//