LOCUS RID46133.1 1612 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010636-3018
PROTEIN_ID RID46133.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 44888295)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A9"
protein /locus_tag="BRARA_I02815"
/db_xref="Phytozome:Brara.I02815"
intron_pos 112:0 (1/26)
intron_pos 171:2 (2/26)
intron_pos 185:0 (3/26)
intron_pos 237:1 (4/26)
intron_pos 275:2 (5/26)
intron_pos 302:2 (6/26)
intron_pos 311:0 (7/26)
intron_pos 330:0 (8/26)
intron_pos 352:0 (9/26)
intron_pos 377:0 (10/26)
intron_pos 413:0 (11/26)
intron_pos 458:0 (12/26)
intron_pos 493:2 (13/26)
intron_pos 525:0 (14/26)
intron_pos 581:0 (15/26)
intron_pos 628:0 (16/26)
intron_pos 695:0 (17/26)
intron_pos 728:0 (18/26)
intron_pos 779:0 (19/26)
intron_pos 897:2 (20/26)
intron_pos 958:0 (21/26)
intron_pos 1066:0 (22/26)
intron_pos 1318:1 (23/26)
intron_pos 1359:0 (24/26)
intron_pos 1441:0 (25/26)
intron_pos 1490:2 (26/26)
BEGIN
1 MGFEALAWYC KPVAQGFWEK TVDGAFGAYT PCVVNTLVML VSQIVLLGLC LYRIWIIFRN
61 AKAQLYVLRN KYYNCVQGIL ACYCGAEPVL RLVMRVSLFS MDEETYLPPF EVASLTVEAF
121 AWLSMLSLVG LETKRYVKEF RWYVRFGVVY VLVADAVLLD LVLPLNNSLN RTALYLCISS
181 RCAQVLFGVM LLVYIPELDP YQGYHTLNNE SIDNVEYDVL PEGENICPER RAGFFTGIFF
241 DWITPLMQLG YRKTLNEKDV WQLDKWDQTE TLIKRFQRCW IEESRRSKPW LLRALNKSLG
301 GRFWFGGIFK IGHDLSQFVG PLILSQLLRA MQEDDPAWVG YVYAFLIFVG VTLGVLCQSQ
361 YFQHVGRAAF RLRSTMVAAV FHKSLRLTHE ARKNFTSGKV TNMITADASA LQLIVEQLHG
421 LWSAPFRIIM SIILLYQQLG VASLFGSLIL FLLIPLQTLV INKMRKLTKE GLQWTDKRVG
481 ITNEILASMD TVKCYAWEKS FESRIEGIRN EELSWFRKAQ LLSAFNSFIL NSTPVVVTVV
541 SFGVFVLLGG DLTPARAFSS LSLFSVLRSP LNMLPNLLSQ AVNANVSLQR IEDLLLSEER
601 VLAHNQPLQP GAPAISIKNG YFSWDSKTTN PTLSNINLEI PVGSLVAIVG GTGEGKTSLV
661 SAMLGELSHG ETSNVVIRGS VAYVPQVSWI FNATVRENII FGSDFERERY WRAIDVTALQ
721 HDLDLLPGRD LTEIGERGVN ISGGQKQRVS MARAVYSNSD VYIFDDPLSA LDAHVAQQVF
781 DSCMKEELKG KTRILITNQL HLLPMMDRII LVSEGMIKEE GTFEELSGNG SLFQKLMENA
841 GKMDATQEMN KFDDEKIPTV NVEIKLGSTK QGEDGRSVLV KKEERESGII SWNVLTRYKN
901 AVGGLWVVLI LLACYVTTEA LRLTSCTWLS FWTDQSTSKS YSTGFYIVMF ALFGFGQVAV
961 TFTNSFWLLT SSLHAAKTLH DAMLNSILRA PMLFFDTNPT GRVINRFSKD IGDIDRIVAN
1021 LMNMFMSQLW QLLSTFALIG AVSTISLWAI MPLLILFYAA YLYYQNTSRE VRRMDSVARS
1081 PIYAQFGEAL NGLSSIRAYK AYDRMAKING KSVDNNIRFT LANTTCNRWL TIRLETLGGV
1141 MIWLTATFAV MRSSNTENQA DFASTMGLLL SYTLNITTLM SGVLRQASKA ENSLNSVERV
1201 GNYIDLPSEG AEIIESNRPV PGWPSRGSIT FEDVHLRYRP GLPIVLHGLS FSVSPNEKVG
1261 VVGRTGAGKS SVLNALFRIV EVEKGRIMID DYDVAKFGLT DLRRVLSIIP QSPVLFSGTV
1321 RFNIDPFDEH NDADLWEALQ RAHMKDVIAR NPLGLDTEVS EGGENFSVGQ RQLLSLVRAL
1381 LRRSKILVLD EATASVDVRT DTLIQRTIRE EFKSCTMLVI AHRLNTIIDC DKILVLSSGQ
1441 ALEYDSPQEL LSRDTSAFFG MVHSTGLANA QHLCNLVFGG REVNGRRQEG FKSAKDSGGD
1501 EFSGEIGRRC RVVRRDPTKL RRDSTKLRRD STKLRREARS LANSMNSGEL GKLRRTRRSP
1561 ANSVMYSELG DLLANSAIFD ELDETPSKTE RAIVMEISEE EDDSVYIETI HI
//