LOCUS RID41784.1 1626 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-1867
PROTEIN_ID RID41784.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J01716"
/db_xref="Phytozome:Brara.J01716"
intron_pos 43:0 (1/15)
intron_pos 80:2 (2/15)
intron_pos 758:2 (3/15)
intron_pos 868:0 (4/15)
intron_pos 940:0 (5/15)
intron_pos 964:1 (6/15)
intron_pos 1033:0 (7/15)
intron_pos 1054:0 (8/15)
intron_pos 1123:2 (9/15)
intron_pos 1161:0 (10/15)
intron_pos 1323:0 (11/15)
intron_pos 1422:2 (12/15)
intron_pos 1504:0 (13/15)
intron_pos 1528:2 (14/15)
intron_pos 1574:0 (15/15)
BEGIN
1 MRGEVCFDCL EQRIKSDFSD QIVFSYGLSD SPLPFGSSAV VKVSDSSEEG VSASEFDSSS
61 SQFVLEYLRK EEHGCLVNYV ERLGNSNDDV DCDENLICSH FKATNGRELG LGTEDISCES
121 SGSFSSRRAL AALLPIAQIS KCSASHLQKL ASSFLSECPE DYILASLNRL IDGKSSGQET
181 ESFLRLIGLP LLEEESDLPC LRHPNLSPVL GVLTSSDCLV SVLPKAPFTL ENILYYSPRA
241 LKSEWHRNFI VYQLLSVLAH LHGLGISHGD IRPSNIFLSD SLWSWLKIYS KPGLGSGDAS
301 SSASRKSLCV EGCYYSGLYA DLKISSHLDW QTIFDKWWKG EASNFEYLLF LNKLAGRRWG
361 DHTFHPVMPW VIDFSKKPEK DSDSGWRDLR KSKWRLAKGD EQLDFTYSTF EIPHHVSDEC
421 LSELAVCSYK ARRLPLSVLR KAVRSVYEPN EYPSDMQRLY DWTPDECIPE FYCDSRIFCS
481 LHPSMSDLAV PPWASSPEEF IRLHRDALES PHVSSRLHHW IDITFGYKMS GQAAITAKNV
541 MLSSSEPAAP RSVGRRQLFF RPHPVRLRFS REKEQSRNEQ EMHTFHGFGV DNNRSVILEA
601 DEYLEETEEA SAFSEHASHL SPKYHLYQNL DESPLHESCS ENTNKADTSL SGTSRNKGVP
661 SDICLNYLLE HIDVRDEVSI EPQELLLWRQ DFCLGKAIAE DIFSIGCVLA ELYLMRPLFN
721 SVSLATYLEG GDLPELIKEL PPLTKVLVEA CIERDWRRRP SAKSLLNSPY FSATVKSAYL
781 FAAPLHLLAK GGTRLYYAAS FAKQGALKAM GSFVAEMCAA YCLPLVTTLL SDNECEWAYV
841 LIKEFTKYLT PVAVQRLVLP SIQKILLTTG YSHLKVSLLQ DSFVRELWTR IGKRVYLEMI
901 HPLVISNLYN SPDKISASAA SVLLIGSSEE LGAPVTVHQT ILPLINYFGK GIRTDGIEVL
961 VRIGRLLGVN YIVKQMMPLL EHVVCFCIDL SSMKKPEPVH SWCSLALTDC LITLDGLVAL
1021 IPDELLIHEL TKGRLCLHVR VLMQKNLELR VLQFAATSLM SICQRIGQEL TALHVLPQLK
1081 ELFDEFAFSE KSTDVSDSLN WKIRTTERNS HPESPIKSRM DLVLLLYPSF ASLLGMEKLR
1141 QGCPTWLLLE QYLLKHHNWK WEYTGRSSRY NMETKPVLSK GPASKHTPKT LLNGSGRVVP
1201 QSQGLRNSNH LKPHIHDPVE GQEEVLSPLV HEPWSWFPSP VACWDGLDIG RFGNPKDEQR
1261 WKIRASVLSS AHAHRGALRS LVVSEDECTV FTSGIDPGFK GSVQKWELAS LSCVSGYHAH
1321 EEVVNDISIL SSTGKIASCD GTIHVWNSQT GKLIHLFSES PADQDQDQAS SYLSSNNNSN
1381 QSNRHVSHGL SNGIFDGNMY TCMHYLEYMD QLVVGTGSGA LRFIDLARGQ KLQLWSGESF
1441 ESGSTSLVSA LCSGGSHTKQ GDGASVSPSW IAAGFSSGQC KLFDVRESGV ISSWRAHDGY
1501 VTKLAAPESH LLVSSSLDKT LRIWDLRKSW TPEPFVVKGH CDGVSGFSIW GKDVISISRN
1561 NIGVFSLSKS QDEDEQQQQH QRIIPQKLYM TEKGGRVRSD LSTICVLPFS RLFIVGAHDG
1621 YLRICC
//