LOCUS RID39979.1 1773 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010637-62
PROTEIN_ID RID39979.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 19914974)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A10"
protein /locus_tag="BRARA_J00053"
/db_xref="Phytozome:Brara.J00053"
intron_pos 21:1 (1/22)
intron_pos 42:0 (2/22)
intron_pos 73:0 (3/22)
intron_pos 97:1 (4/22)
intron_pos 192:1 (5/22)
intron_pos 215:0 (6/22)
intron_pos 259:0 (7/22)
intron_pos 273:0 (8/22)
intron_pos 445:0 (9/22)
intron_pos 496:2 (10/22)
intron_pos 671:0 (11/22)
intron_pos 692:0 (12/22)
intron_pos 726:0 (13/22)
intron_pos 832:0 (14/22)
intron_pos 863:0 (15/22)
intron_pos 897:0 (16/22)
intron_pos 932:0 (17/22)
intron_pos 976:2 (18/22)
intron_pos 1038:0 (19/22)
intron_pos 1082:0 (20/22)
intron_pos 1119:2 (21/22)
intron_pos 1149:0 (22/22)
BEGIN
1 MAPKSNRGKT KGDKKKKEEK VLPVMVDVIV NLPDETEAIL KGISTDRIID VRRLLSVNFD
61 TCHVTNYSLS HEVRGSQLKD TVDVSALKPC VLTLTEEDYN EGTAMAHVRR LLDVVACTTC
121 FGPSPEKSDS VKNAQVKGGG KNPKQSETSP PPSPAPKDAV VDEAGETSHS FPKLGSFYEF
181 FSLAHLTPPL QYVRLVAKRE TEDIAAEDHL LSIDVKLCNG KLVHVEGCRK GFYSVGKQRI
241 ICHNLVDLLR QISRAFDNAY SDLLKAFSER NKFGNLPYGF RANTWLIPPS AAQSPAAFPP
301 LPVEDERWGG DGGGQGRDGS YDLVPWANEF AFIASMPCKT AEERQLRDRK VFLLHNLFVD
361 VATFRAIKAV QKVMADPVLA EDSQVLYSET VGDLSVTVTR DTSNASSKVD TKIDGIQATG
421 LDKTKLMERN LLKGLTADEN TAAHDVATLG TISLKYCGYI SVVKIEKENE KLSPPSQIVD
481 LLEQPEGGAN ALNINSLRFL LHKSSPEQNK KTHQQQDDEL TSSREFVSKM LEESLVKLEE
541 EEIDRDSIMR WELGACWIQH LQDQKNTEKD KKQTNEKSKN ELKVEGLGKP LKSLNSNKKK
601 TDASSPKAQQ TAVSSQVDTA SSEADNAAIT ATLQSDAEKN AQENVLILKN LLSEAAFTRL
661 QESDTGLHDK SLQELVDLAQ KYYTEVAIPK LVADFGSLEL SPVDGRTLTD FMHTRGLRMR
721 SLGYVVKLSD KLSHVQSLCV HEMIVRALKH ILQAVISAVA ADTDKIAAKV ATALNMMLGI
781 PKTEAENSWN VHPLIFRWLE KFLKKRYDYD LNAFSYKDLR KFAILRGLCH KVGIELIPRD
841 FDMESPEPFQ KTDVVSLVPV HKQAACSSAD GRQLLESSKT ALDKGKLEDA VTYGTKALAK
901 LVAVCGPYHR MTAGAYSLLA VVLYHTGDFN QATIYQQKAL DINERELGLD HPDTMKSYGD
961 LAVFYYRLQH TELALKYVKR ALYLLHLTCG PSHPNTAATY INVAMMEEGL GNVHVALRYL
1021 HKALKCNQRL LGPDHIQTAA SYHAIAIALS LMEAYHLSVQ HEQTTLRILR AKLGPDDLRT
1081 QDAAAWLEYF ESKAFEQQEA ARNGTPKPDA SIASKGHLSV SDLLDFINPS HNAKGKQSVA
1141 AKRKSYMKLK EKSNQNVVSE QLTETPRENQ KEMSEEETEA TGSEDGQSSD ANQEAILAPA
1201 EEPPSHPVID EAIMDNSNPT TSAEGSTETQ HPDGSEDGWQ PVHRPRSAGS YGRRLKQRRA
1261 SVGKVYTYQK KNVEADNDNP VLQNATQPNA TYYVLKKRTA SYANYGDHHS PGMTTQGTKF
1321 GRKAVKTLAY RVKSTQPSSD NPKTSAETSE EDGLKADASP AVPSGLSSNV QNEAYPKSSV
1381 VSLGKSPSYK EVALAPPGSI AKYQVWAPQA EASDKQEEKK SEEGTSVELT RDEQMITVSE
1441 KEVKNEISAD AESSKPQGKE EIEVELQSSE VEFKGNNLNG NEESGGGIQV EEPVLEDKEG
1501 VTDMIHSNTE QEVKDQLAAD SDDLKEKLGI SATDSSDAPR ELLLPNKKLS ASAVPFNPSS
1561 PPSIIRPTPI GMNIGPSWPV NMTLHHGPGP FPSPPTTPNL MQPMSFVYPP PYTQSVPTST
1621 YPVTSGPFHP NQFPWPHMSE FVPRTVWPGC HPVEFPPPHM IAAEPIASTV LEPTVILPTD
1681 IDTSGVEEGK QDVAATTDSV NHVNAVASSE MENGTKKFED DEKTFSILLR GRRNRKQTLR
1741 MPISLLNRPY DSQPFKIAYS RVIRGSEAPK SAA
//