LOCUS PKU63323.1 1082 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum DNA damage-binding protein 1 protein.
ACCESSION KZ503501-19
PROTEIN_ID PKU63323.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and the Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, Shenzhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="fragScaff_scaffold_1680"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /gene="DDB1"
/locus_tag="MA16_Dca013367"
/note="GO_component: GO:0005634 - nucleus [Evidence IEA];
GO_function: GO:0003676 - nucleic acid binding [Evidence
IEA]"
/db_xref="InterPro:IPR004871"
intron_pos 35:2 (1/16)
intron_pos 52:0 (2/16)
intron_pos 72:0 (3/16)
intron_pos 102:2 (4/16)
intron_pos 150:2 (5/16)
intron_pos 176:0 (6/16)
intron_pos 246:0 (7/16)
intron_pos 281:2 (8/16)
intron_pos 318:0 (9/16)
intron_pos 385:0 (10/16)
intron_pos 457:0 (11/16)
intron_pos 494:0 (12/16)
intron_pos 586:0 (13/16)
intron_pos 677:2 (14/16)
intron_pos 795:0 (15/16)
intron_pos 890:0 (16/16)
BEGIN
1 MSFWNYVVTA HKPTAVSHSC VGNFTSPQEL NLIIAKCTRI EIHLLSAHGL QPMLDVPIYG
61 RIATLELFRP HGESQDLLFI ATERYKFCVL QWDGEASELI TRYPMNADLS FSHSFLVGSL
121 YNISLIAVVL FYEVIPFDNK GQLKEAFNIR LEELQVLDIK FLYGCSKPTI AVLYQDNKDA
181 RHLKTYEVAL KDKDFIEGPW SQNNLDNGAG LLIPVPLPLG GVIIIGEETI VYCNGSSFKA
241 IPIRPSITRA YGRIDPDGSR FLLGDNSGLL YLLVISHERE RITGLKIEHL GETSVASSIS
301 YLDNAVVYVG SKYGDSQLIK LNLQPDEKGS YVEVLEKYVN LGPIVDFCVV DLERQGQGQV
361 VTCSGAYKDG SLRIVRNGIG INEQASVELQ GIKGLWSLRS STTDPNDTFL VVSFISETRI
421 LAMNMEDELE ETEIEGFYAQ AQTLFCQNAL HDQLVQVTAS SVRLVSCTSR ELQDQWIAPT
481 GFSVNVATAN ATQVLLAIGG GHLVYLEIGD GKLTEVKHIQ LEYEISCLDI NPIGEKANSS
541 ALAVVGMWTD ISVRIFSLPS LDLITKESLG GEIIPRSVLI CSFEGISYLL CALGDGHLFN
601 FLLNLATGEL SDRKKVSLGT QPITLRTFSS KDTTHVFAAS DRPTVIYSSN KKLLYSNVNL
661 KEVSHMCPFN SAAFPDSLAI AKEGELSIGT IDDIQKLHIR SIPLGEHARR ICHQEQSRTF
721 AICSLKNCLI NNDETEVHFV RLLDDQTFEF ISTYQLDTFE YGCSIISCSF SDDNNVYYSV
781 GTAYVLPEEN EPTKGRILVF VVEDGKLQLI AEKETKGAVY SLNAFNGKLL AAINQKIQLY
841 KLMLREDGTR ELQSECGHHG HILALYVQTR GDFIVVGDLM KSISLLLYKH EEGAIEERAR
901 DYNANWMTAV EILDDDVYLG AENNFNLFTV RRNSDGATDE ERGRLEVVGE YHLGEFVNRF
961 RHGSLVMRLP DSEAGNIPTV IFGTVNGVIG IVASLPHDHY VFLEKLQSNL VKVIKGVGGL
1021 SHEQWRSFNN EKKTVDARNF LDGDLIESFL DLSRSRMEEI SKTIGVSVEE LCKRVEELTR
1081 LH
//