LOCUS KZ503501 1498525 bp DNA linear CON 21-DEC-2017
DEFINITION Dendrobium catenatum unplaced genomic scaffold
fragScaff_scaffold_1680, whole genome shotgun sequence.
ACCESSION KZ503501 JSDN02000000
VERSION KZ503501.1
DBLINK BioProject: PRJNA262478
BioSample: SAMN03083363
KEYWORDS WGS.
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and the Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, Shenzhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1498525
/organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="fragScaff_scaffold_1680"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
assembly_gap 9109..9208
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 22340..22453
/estimated_length=114
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 30019..41100
/estimated_length=11082
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 44800..45272
/estimated_length=473
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 61837..62408
/estimated_length=572
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene complement(77247..88804)
/locus_tag="MA16_Dca013349"
mRNA complement(join(77247..77339,77452..77529,77606..77683,
77769..77843,78053..78139,78734..78862,88748..88804))
/locus_tag="MA16_Dca013349"
/product="Uncharacterized protein"
CDS complement(join(77247..77339,77452..77529,77606..77683,
77769..77843,78053..78139,78734..78862,88748..88804))
/locus_tag="MA16_Dca013349"
/codon_start=1
/product="Uncharacterized protein"
/protein_id="PKU63305.1"
/db_xref="InterPro:IPR002791"
/translation="MSGKDSGRARSARKLTRPQLAEVFAKDGLSFLASCQNLVSRPWV
IDDLDSFKTNWAKKSWKKAIIFVDNSGADIVLGILPFARELLKRGTQVVLAANDLPSI
NDVTYPELVEIISKLKDEKGQLVGVDASGLLVANSGNDLPVIDLANVSPELAYLASDA
DLVVLEGMGRSIETNLYAQMKCDSVKIGMVVIAVLLIE"
gene 131917..158535
/locus_tag="MA16_Dca013350"
mRNA join(131917..132041,137407..137497,149328..149361,
158270..158535)
/locus_tag="MA16_Dca013350"
/product="hypothetical protein"
CDS join(131917..132041,137407..137497,149328..149361,
158270..158535)
/locus_tag="MA16_Dca013350"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63306.1"
/translation="MATPFPYRFQEDSRTGVFCANEEFGACRDFRISSLAFFPPLWFP
RQQLKAHGFQQRAAKRMPNGIINSTVSSKFQFNCMSKLPLTGHLSVGSRRLCARYSDV
YILDDLDDDVDFSVRFVFHKLLFLTIVVIVSTAFLSSCLACRACSFVAVRSCSDHPSG
GSSRDRSASIC"
assembly_gap 135346..136769
/estimated_length=1424
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene complement(160172..160672)
/locus_tag="MA16_Dca013351"
mRNA complement(160172..160672)
/locus_tag="MA16_Dca013351"
/product="Regulator of ribonuclease-like protein 3"
CDS complement(160172..160672)
/locus_tag="MA16_Dca013351"
/codon_start=1
/product="Regulator of ribonuclease-like protein 3"
/protein_id="PKU63307.1"
/db_xref="InterPro:IPR005493"
/translation="MACLATSEICDTNQALVIKGDVRVLQPIFQIYGQCRAFSGPIVT
LKVFEDNVLVRDMLESPGDGRVLVIDGGGSTRCALVGGNLGQLAQNMGWAGILVNGCI
RDVDEINACDIGVRALGSNPLKSSKKGHGDKHVPVNVWGTVIHDGEWLYADSDGILIS
KSELSV"
gene complement(168976..176850)
/gene="UVR8"
/locus_tag="MA16_Dca013352"
mRNA complement(join(168976..169463,175273..175585,
175921..176137,176531..176850))
/gene="UVR8"
/locus_tag="MA16_Dca013352"
/product="Ultraviolet-B receptor UVR8"
CDS complement(join(168976..169463,175273..175585,
175921..176137,176531..176850))
/gene="UVR8"
/locus_tag="MA16_Dca013352"
/codon_start=1
/product="Ultraviolet-B receptor UVR8"
/protein_id="PKU63308.1"
/db_xref="InterPro:IPR000408"
/translation="MKRSLLNGARLRTCGGAIVVAARSICSGGSWRSTSVWSFGDNSN
GALGISSPLLDAYEPTKVPSLPANVTTIASGHYHSLAVNADGEVWAWGRNEEGQLGRG
LDAPRDKWRQPERVLGLDDVNVQAAYASGVVSAAVGDDGSLWVWGRSKRGQLGLGKGV
TEAVKPTKVEALLGHEICKVSFGWGHALAFTRDGKLFGWGYAEDGRLGKMGEALISSS
VQEPNFYSSLDKSVSMFDVAEKLVAEKMEKENNMPIIWAPSLVQELSSIEVSDAACGL
DHSLVLCCDGTVFSSGDNTLGQLGRDTEGTKMLPVQINNFHPISLAAGLGHSLFLYLI
PSKGEAEEATGILSWGWNCSSQLGRHGPEKVPSPVAGLDVKRLVSVSAGRVHSISLTS
KGEVFTWGSGRNGRLGLGSSADEAEPTFVECLEGLEVLQAIAGFDHNLLLIAD"
gene 177604..177846
/locus_tag="MA16_Dca013353"
mRNA 177604..177846
/locus_tag="MA16_Dca013353"
/product="hypothetical protein"
CDS 177604..177846
/locus_tag="MA16_Dca013353"
/note="GO_function: GO:0008270 - zinc ion binding
[Evidence IEA]"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63309.1"
/db_xref="InterPro:IPR010666"
/translation="MSSVNSSVRQEIRQHSQVYCHCHLKCVVYTCYRGLNRGKQFYRC
IHNRTDDDCNFFKWINELEEPSLDTHYAWRGIDEKV"
gene complement(179134..180614)
/locus_tag="MA16_Dca013354"
mRNA complement(join(179134..179664,179739..180614))
/locus_tag="MA16_Dca013354"
/product="hypothetical protein"
CDS complement(join(179134..179664,179739..180614))
/locus_tag="MA16_Dca013354"
/note="GO_function: GO:0008270 - zinc ion binding
[Evidence IEA]"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63310.1"
/db_xref="InterPro:IPR004332"
/db_xref="InterPro:IPR006564"
/db_xref="InterPro:IPR007527"
/db_xref="InterPro:IPR018289"
/translation="MGAKDLEVGTLFNDAITFKNALRSIAIRNNFGVIIKASDKKRVI
ATCSYQTCQWRIRASLCEDTQSFQIRRVDGVHTCPGVNRAGNRLATSAWVANEIQDLV
KRHPDIPPKEIKSNLEKEYGLSVPYMKLWRAREQARDAIFGSVDDSYKWVPTLKAELL
ERNPGSHITYTFDSSDHAFQRFYVSFKVCADGFLSGCRPLISVDACHLKSKYLGMLLS
ANALDGNNGLFNIAYAVVETESKQTWTWFLSNLGDTIGRNLHPLAFISDMEKGLGDAI
REIYPEAEHRVCIRHLCLHNTIDFNEKLAEVSNVSPKVHSYLLSLPYKWSISQFMIGI
NHAANTNNFAESFNSWIVEARNKPVVDLVDIIRGMLMEQRDMRKMNSMTWHRELVPQE
EEYIRNITTRKDHLIVRQSSVWKAEVEGVHSRHIVDVEKRECTCRVWEVTGLPCIHVV
AFIGMKEHPLWHSYIDEH"
gene complement(185005..185313)
/locus_tag="MA16_Dca013355"
mRNA complement(185005..185313)
/locus_tag="MA16_Dca013355"
/product="hypothetical protein"
CDS complement(185005..185313)
/locus_tag="MA16_Dca013355"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63311.1"
/translation="MSSSQRTLVVYPNSTSAQPLNSNEKGSFGPLIAVVSVILVLTVA
ACIIGHFCARRYLRPRPRRDQPVYYSKDDLEGLPESRSPAAAAGGGIPAGGSAIHGAA
"
gene 195850..208718
/locus_tag="MA16_Dca013356"
mRNA join(195850..195852,202097..202231,202306..202461,
202937..203059,207490..207633,208176..208718)
/locus_tag="MA16_Dca013356"
/product="hypothetical protein"
CDS join(195850..195852,202097..202231,202306..202461,
202937..203059,207490..207633,208176..208718)
/locus_tag="MA16_Dca013356"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63312.1"
/db_xref="InterPro:IPR003863"
/translation="MALANDNKMKQSLDAHVCERQRWLATPSSLQELLMKIPHRLHNC
LQSGLKKHKQKLDNTNFLAIGEKDSCKTWKVDLERQMQAWRENSYWLDHPPELKVSVP
EGSLCNLNVKCNVGLPPDAVFNIVIDPENKRVFKNIKEVISRRVLVDEGPRQVVEVEQ
AVIWRFLWWSGTMSIQVLVDQNRMDHTIKFKQGKSGFMKRFEGTWKVEPLFLDKELCS
PCEPKSWLEYDTCSGGKGRVGSIVSLDQLIQPALVPPPPISWYLRGVTERTTEMLIYD
LFAEARRLRGAAAMNSTPKHGLEAAHDQQRGVAVNRSTEIQERWRMQRVAAEADKIIG
FAVNGSTDIKERWRHRRSKRKQSSYKALFADAC"
gene 216075..219142
/gene="MYB305"
/locus_tag="MA16_Dca013357"
mRNA join(216075..216240,216372..216501,218821..219142)
/gene="MYB305"
/locus_tag="MA16_Dca013357"
/product="Myb-related protein 305"
CDS join(216075..216240,216372..216501,218821..219142)
/gene="MYB305"
/locus_tag="MA16_Dca013357"
/note="GO_function: GO:0003682 - chromatin binding
[Evidence IEA]"
/codon_start=1
/product="Myb-related protein 305"
/protein_id="PKU63313.1"
/db_xref="InterPro:IPR001005"
/db_xref="InterPro:IPR017930"
/translation="MGDQVEAISVDKRINNNEESEVVRKGPWTMEEDLILINYIAIHG
EGVWNNLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMDLHSRWGNRWSK
IARQLPGRTDNEIKNYWRTRIQKKVKDGEPVDCSSQIVNDEGSSSHAGGLEEAMAAQP
SYPIYSDIANPHEAYVPAAYSGSINTSETYLSAEDFWAVQSLNGL"
assembly_gap 241693..241702
/estimated_length=10
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene complement(258869..259150)
/gene="RAD"
/locus_tag="MA16_Dca013358"
mRNA complement(258869..259150)
/gene="RAD"
/locus_tag="MA16_Dca013358"
/product="Transcription factor RADIALIS"
CDS complement(258869..259150)
/gene="RAD"
/locus_tag="MA16_Dca013358"
/note="GO_function: GO:0003682 - chromatin binding
[Evidence IEA]"
/codon_start=1
/product="Transcription factor RADIALIS"
/protein_id="PKU63314.1"
/db_xref="InterPro:IPR001005"
/db_xref="InterPro:IPR017884"
/translation="MASSTASRNSSSGWSKSQNKLFERALAVYDKDTPDRWQNVARFV
GGGKSVDDVRLHYERLLEDVRRIESGHVPYPNYRSTGGNEEQRYVRSNR"
gene complement(276761..277193)
/locus_tag="MA16_Dca013359"
mRNA complement(join(276761..276926,277015..277193))
/locus_tag="MA16_Dca013359"
/product="Anaphase-promoting complex subunit 10"
CDS complement(join(276761..276926,277015..277193))
/locus_tag="MA16_Dca013359"
/codon_start=1
/product="Anaphase-promoting complex subunit 10"
/protein_id="PKU63315.1"
/db_xref="InterPro:IPR004939"
/translation="MATESDGEEDTTGKLSGSQNLAVDDDSREMAKKAAWSVSSCKPG
NGVPSLRDDNLETYWQSDGAQPHLVNIQFQKKVKLHVMFCLRFFFLACSRNFDLRMIF
FLFFFPVIGTLC"
gene complement(284570..302053)
/gene="RER1B"
/locus_tag="MA16_Dca013360"
mRNA complement(join(284570..284777,301704..302053))
/gene="RER1B"
/locus_tag="MA16_Dca013360"
/product="Protein RER1B"
CDS complement(join(284570..284777,301704..302053))
/gene="RER1B"
/locus_tag="MA16_Dca013360"
/note="GO_component: GO:0016021 - integral to membrane
[Evidence IEA]"
/codon_start=1
/product="Protein RER1B"
/protein_id="PKU63316.1"
/db_xref="InterPro:IPR004932"
/translation="MEGASGDASGAYIALARWKNDFSRAFQYYLDRSTPHRVERWLGT
LAVALIYLLRVYLIQGFYIVTYGLGIYLLNLLIGFLSPIADPEVEGLDGASLPTRGSD
EFKPFIRRLPEFKFWYSITKAICIAFVMSFFSFFDVPVFWPILLFYWIVLFFLTMKRQ
IMHMIKYKYIPFNTGKQVSVVHYLL"
assembly_gap 314266..314365
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene 318683..319927
/locus_tag="MA16_Dca013361"
mRNA 318683..319927
/locus_tag="MA16_Dca013361"
/product="hypothetical protein"
CDS 318683..319927
/locus_tag="MA16_Dca013361"
/note="GO_process: GO:0015074 - DNA integration [Evidence
IEA]"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63317.1"
/db_xref="InterPro:IPR001584"
/translation="MAPITECLKLKAFNWGTEQELSFNKIKEALTTAPILALPSFEKL
FTVDTDASSIGIGAVLSQEGRPVAYFSEKLCPARRNWAAYEQELYAVVRALKQWESYL
LHQDFVLCSDNKALQHINTQKNISRMHACWLVFLQRFSFTLKHKPGTENRVADALSRR
AILLTWMQAELVGLEHVTELYADDEDFAAIWAKCLQSSHCEEYSIRQGFLFKHHLLCI
PISSWRQHLICETHCGGLAAHLGQDNTLRQLQARFYWPRLRRDTLRFVESCAVCQAYK
GGAQNSGLYMPLPVPKSIWEDISMDFVLGLPRTRRGNDSILVVVDRFSKMSHFLSCKK
TSNALNIATLFFNEVVRLHGLPKSITSDRDVKFISHFWRELWKRLGTDLKFSSAYHPQ
PDGQTEVVNRTLGNMLRCLVHE"
gene 320114..320464
/locus_tag="MA16_Dca013362"
mRNA 320114..320464
/locus_tag="MA16_Dca013362"
/product="hypothetical protein"
CDS 320114..320464
/locus_tag="MA16_Dca013362"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63318.1"
/translation="MLAEVRQQIIKSNARYKAAADVHRRERLFKEGDLVMVRLRRERF
PPGAYSKLAKRKIGPVPILAKINDNAYRIELPADCNTSSTFNVADISPYKPADDAIVL
ISSSESSSSEAGED"
gene 343895..352391
/locus_tag="MA16_Dca013363"
mRNA join(343895..345485,345683..345708,351684..352391)
/locus_tag="MA16_Dca013363"
/product="F-box protein"
CDS join(343895..345485,345683..345708,351684..352391)
/locus_tag="MA16_Dca013363"
/codon_start=1
/product="F-box protein"
/protein_id="PKU63319.1"
/translation="MSDNDAPTCKEGDVIEQFRGKNISASQTPYMGQWMAHWMQPCKS
SSSKDCQLHSDALADNILHKFEGHDSSELDRLKSKEFKFVRVDMNQRYSFVDKGKSNL
AAEDDPSSYDIRSGEPCVDREKFKIKENFSMRRNVEPINDGRTFCKKLSAQQLTESSI
KWKKIGSYCCHSLDVSESNFEHLPMLDINREIETMLASKEKSAYGAVSVKMVKENLSL
CESIGTSSLVELAPGSCLAARKITDDAEKMMTTYEGFLPDSAVGMDGASSPVIHGCKY
QKENMIACIFSSGLTNVDPHNKLTCVQHNLCSCSSSSKSRTTETKGKIYSISKGFRNS
WTSLKGGSNHVLSESSPTDFLYSFSTEGHGSEVKADSSSWLLLDQRRLGKPDGSDINH
LPCQMPKCSIHDMSLTESCQNLKSVEIGERFHKFSSTVKYLLVTDKMGKDQCLRERTM
GDSPFTQVNGNTLSKTVTIPTELSCGKKEKSAVRLENFVSDEDRDDRNDSGVHLMGEH
NEFSTKVDTISTHPLHGSSSLPGESISSPQKATAYSNLRNSKTTSASSAREVSIRNAE
IGMAKREEHLASIDEVTHASHTEASVSSTESLAADHIVKVPDVSSSSLLADHTSGSET
CSRWIKRLRGNHSESLSLCTKRFKKGEDSIEIQQSSSRIQNHNPLSSGSLGFMKEHDN
SENVLPCGDSDESLQLWIRRWCRNDHEVSQTLSTPSVPLALQPEKLGVPHEKFEGKMS
ASIGAMALMGRAMNKYTPCRFRREEASLVWNTEE"
gene complement(355300..356725)
/locus_tag="MA16_Dca013364"
mRNA complement(join(355300..355384,355731..355819,
356220..356339,356633..356725))
/locus_tag="MA16_Dca013364"
/product="Aspartic proteinase oryzasin-1"
CDS complement(join(355300..355384,355731..355819,
356220..356339,356633..356725))
/locus_tag="MA16_Dca013364"
/note="GO_function: GO:0004190 - aspartic-type
endopeptidase activity [Evidence IEA];
GO_process: GO:0006508 - proteolysis [Evidence IEA];
GO_process: GO:0006629 - lipid metabolic process [Evidence
IEA]"
/codon_start=1
/product="Aspartic proteinase oryzasin-1"
/protein_id="PKU63320.1"
/db_xref="InterPro:IPR001461"
/db_xref="InterPro:IPR007856"
/db_xref="InterPro:IPR008139"
/translation="MCSACEMAVVWMQNQLKQNQTVELILNYVNQLCERLPSPMGESA
VDCNSLSLMPAVSFTIGGKKFDLTAEQYVLKVGEGPIAQCISGFTALDVPPPRGPLWI
LGDVFMGVYHTEFDYGNLRVGFAKAS"
assembly_gap 372094..372141
/estimated_length=48
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene 377045..397929
/gene="ISPG"
/locus_tag="MA16_Dca013365"
mRNA join(377045..377264,377983..378140,378329..378435,
378523..378623,378707..378783,384881..385000,
385099..385329,385837..386004,386755..386871,
387004..387078,387151..387228,387453..387512,
387616..387678,390927..391199,394783..394927,
395464..395605,395753..395830,396056..396189,
396505..396533,396595..396699,397828..397929)
/gene="ISPG"
/locus_tag="MA16_Dca013365"
/product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase, chloroplastic"
CDS join(377045..377264,377983..378140,378329..378435,
378523..378623,378707..378783,384881..385000,
385099..385329,385837..386004,386755..386871,
387004..387078,387151..387228,387453..387512,
387616..387678,390927..391199,394783..394927,
395464..395605,395753..395830,396056..396189,
396505..396533,396595..396699,397828..397929)
/gene="ISPG"
/locus_tag="MA16_Dca013365"
/note="GO_function: GO:0046429 -
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
activity [Evidence IEA];
GO_process: GO:0016114 - terpenoid biosynthetic process
[Evidence IEA];
GO_process: GO:0055114 - oxidation-reduction process
[Evidence IEA]"
/codon_start=1
/product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase, chloroplastic"
/protein_id="PKU63321.1"
/db_xref="InterPro:IPR004588"
/translation="MMVAGTISTCFPTLKGTEYGLSFAKTVDFAKIASDPNSKKSWHC
KSKVFMIRNSSSGSETVELQPASEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALG
SQHPIRIQTMTTSDTKDVAKTVEEVMRIADKGADIVRITVQGKREADACFEIKNSLVQ
NNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFVKLEYDEEDYQKELEH
IEEVFSPLVDKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD
FHNFIFSMKASNPVIMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIG
TLLQKRTATKGCGSSLQKAGGRWLVLLEEEQQLSGGLVEKQKQSRTVGRRAIAFRKEE
FADGLGDTIRVSLTEPPEEEIDPCRKLASLGMRAANIQKGVAPFEEKNRRYFDFQRRS
GQLPVQKEGDEVDYRGVLHRDGSVLMSVSLDKLKTPELLYRSLAAKLVVGMPFKDLAT
VDSILLKEVPPVDDADAWKSIDMLFSFSRVKEGVQEDSGDNWRLFIFCGDFFHHFLHI
RQPLEGEISPREQSKHRRQHFGASWTAAAKSGALGQQSSSSIFCFLAFDKRLALKRLI
DISMGILVPLSEQLTRPLQNAIVLVNLKELSTGAYKLLPEGTRLAVTVRGDERYEELD
ILMKVADITMLLQCLPYSEEKVGRVHSSRRLFEYLQENSLNFPVIHHLQFPDGTERDD
LVIGAGSEAGALLVDGLGDGILIEAQDHDFDFLRDTSFNLLQVSSSSFQLQLIAIMGC
IVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEGATEALIQLIKDHDRWVDP
PAEE"
gene 404596..426489
/gene="TGD3"
/locus_tag="MA16_Dca013366"
mRNA join(404596..404790,407888..408016,411625..411720,
411944..412021,420239..420300,420425..420500,
424141..424248,426000..426175,426270..426354,
426451..426489)
/gene="TGD3"
/locus_tag="MA16_Dca013366"
/product="Protein TRIGALACTOSYLDIACYLGLYCEROL 3,
chloroplastic"
CDS join(404596..404790,407888..408016,411625..411720,
411944..412021,420239..420300,420425..420500,
424141..424248,426000..426175,426270..426354,
426451..426489)
/gene="TGD3"
/locus_tag="MA16_Dca013366"
/note="GO_function: GO:0000166 - nucleotide binding
[Evidence IEA];
GO_function: GO:0005524 - ATP binding [Evidence IEA];
GO_function: GO:0016887 - ATPase activity [Evidence IEA];
GO_function: GO:0017111 - nucleoside-triphosphatase
activity [Evidence IEA]"
/codon_start=1
/product="Protein TRIGALACTOSYLDIACYLGLYCEROL 3,
chloroplastic"
/protein_id="PKU63322.1"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/translation="MSSSVVYWANAWSMPMTGLQRASRLGGLLPGCRSWCSCSSSRKI
LCASTALPRNLGDGLASLESNSSNVGENSLEGTHVNDETNILIECKDVHKSFGEKQIL
RGLSFKIRHGEAVGIIGPSGTGKSTVLKIMAGLLAPDRGEVLICGRKRHGLVDDEEIA
GLRIGLVFQSAALFDSLTVRENVGFQLYENARMPQDKIAELVKENLAAVGLKGVEDRL
PSELSGGMKKRVALARSIIYDNTKEIVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHL
KGESATRRLGKIASYVVVTHQHSTIRRAVDRLLFLYDGTIVWEGMTQEFTTSTNPIVK
QFASGSLDGPIKY"
gene complement(429295..463797)
/gene="DDB1"
/locus_tag="MA16_Dca013367"
mRNA complement(join(429295..429876,435028..435312,
438441..438792,439212..439486,439601..439876,
440154..440264,440462..440677,440778..440978,
441264..441372,441511..441617,441746..441955,
442144..442219,450450..450593,458676..458767,
458876..458935,463082..463130,463694..463797))
/gene="DDB1"
/locus_tag="MA16_Dca013367"
/product="DNA damage-binding protein 1"
CDS complement(join(429295..429876,435028..435312,
438441..438792,439212..439486,439601..439876,
440154..440264,440462..440677,440778..440978,
441264..441372,441511..441617,441746..441955,
442144..442219,450450..450593,458676..458767,
458876..458935,463082..463130,463694..463797))
/gene="DDB1"
/locus_tag="MA16_Dca013367"
/note="GO_component: GO:0005634 - nucleus [Evidence IEA];
GO_function: GO:0003676 - nucleic acid binding [Evidence
IEA]"
/codon_start=1
/product="DNA damage-binding protein 1"
/protein_id="PKU63323.1"
/db_xref="InterPro:IPR004871"
/translation="MSFWNYVVTAHKPTAVSHSCVGNFTSPQELNLIIAKCTRIEIHL
LSAHGLQPMLDVPIYGRIATLELFRPHGESQDLLFIATERYKFCVLQWDGEASELITR
YPMNADLSFSHSFLVGSLYNISLIAVVLFYEVIPFDNKGQLKEAFNIRLEELQVLDIK
FLYGCSKPTIAVLYQDNKDARHLKTYEVALKDKDFIEGPWSQNNLDNGAGLLIPVPLP
LGGVIIIGEETIVYCNGSSFKAIPIRPSITRAYGRIDPDGSRFLLGDNSGLLYLLVIS
HERERITGLKIEHLGETSVASSISYLDNAVVYVGSKYGDSQLIKLNLQPDEKGSYVEV
LEKYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGI
KGLWSLRSSTTDPNDTFLVVSFISETRILAMNMEDELEETEIEGFYAQAQTLFCQNAL
HDQLVQVTASSVRLVSCTSRELQDQWIAPTGFSVNVATANATQVLLAIGGGHLVYLEI
GDGKLTEVKHIQLEYEISCLDINPIGEKANSSALAVVGMWTDISVRIFSLPSLDLITK
ESLGGEIIPRSVLICSFEGISYLLCALGDGHLFNFLLNLATGELSDRKKVSLGTQPIT
LRTFSSKDTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAK
EGELSIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKNCLINNDETEVHFV
RLLDDQTFEFISTYQLDTFEYGCSIISCSFSDDNNVYYSVGTAYVLPEENEPTKGRIL
VFVVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKLMLREDGTRELQSEC
GHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMTAVEILD
DDVYLGAENNFNLFTVRRNSDGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDS
EAGNIPTVIFGTVNGVIGIVASLPHDHYVFLEKLQSNLVKVIKGVGGLSHEQWRSFNN
EKKTVDARNFLDGDLIESFLDLSRSRMEEISKTIGVSVEELCKRVEELTRLH"
gene complement(465365..482339)
/gene="ARF17"
/locus_tag="MA16_Dca013368"
mRNA complement(join(465365..465563,468848..469032,
470442..471616,471818..471965,472182..472257,
472471..472593,472656..472820,472911..473001,
479908..479992,480106..480261,480337..480393,
480483..480581,481380..481492,482282..482339))
/gene="ARF17"
/locus_tag="MA16_Dca013368"
/product="Auxin response factor 17"
CDS complement(join(465365..465563,468848..469032,
470442..471616,471818..471965,472182..472257,
472471..472593,472656..472820,472911..473001,
479908..479992,480106..480261,480337..480393,
480483..480581,481380..481492,482282..482339))
/gene="ARF17"
/locus_tag="MA16_Dca013368"
/note="GO_component: GO:0005634 - nucleus [Evidence IEA];
GO_function: GO:0003677 - DNA binding [Evidence IEA];
GO_function: GO:0046983 - protein dimerization activity
[Evidence IEA];
GO_process: GO:0006355 - regulation of transcription,
DNA-dependent [Evidence IEA];
GO_process: GO:0009725 - response to hormone stimulus
[Evidence IEA]"
/codon_start=1
/product="Auxin response factor 17"
/protein_id="PKU63324.1"
/db_xref="InterPro:IPR003311"
/db_xref="InterPro:IPR003340"
/db_xref="InterPro:IPR010525"
/db_xref="InterPro:IPR011525"
/translation="MRLSSSSLSSSDLTQQPQEGEQRCLNSELWHACAGPLVSLPVVG
TRVVYFPQGHSEQVAASTNKEIDSHIPNYPSLPPQLICQLHDVTMHADVETDEVYAQM
TLQPLNPQEQKDPYLPAELGAASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPP
LDFSQQPPAQELVARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVTGDSVLF
IWNENNQLLLGIRRANRPQTVMPSSVISSDSMHIGLLAAAAHAAATNSRFTIFFNPRA
CPSEFVIPLAKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLNPVHWPN
SHWRSVKVGWDESTAAERQPRVSLWEIEPLTTFPMYPSPFSLRLKRPWPPGLPPLYGG
NIGDLGLNSALAWLRDSGNLGVQPLNFQGIGVSPYNQTRFDNSFGLKPDIYQATTAEA
IQDMRPMEPLKQVPTNLQFQHTPSIINRPNNLLSNQASQHSQSQHPFVQNSQENQGHN
HAQSSFLLQQLQQCQSFGDQQQQLKQIQQNPQVQRQQQQQQQQQHKQFYDQVISGIML
GQTMQPSVSQSLSPSLQKISSISHPLSFPDSNGNYVSTPGTSSLNGVLQPFSYEETSN
LFSSPMTSPLITSSPWLSKQTALEPLLPSGAQCVLPQVDQFSSLFSDIPRDTTMLAPF
PGRDCSNNHEGVDPQHLLFGANLELSPLLVQNGVSGLRSIGCETNTARVSHAANNFLS
VTEVDFQLNQALTNSGGLEESGLLHSPDNIGQEISQNGTYVKVYKSGTFGRSLDITRY
NSYPELRSELGRLFGLDLEDPLRSGWQLVFVDRENDVLLVGDDPWPEFVNNVWCIKIL
SLQEVQQMAKQGVNLINSAPLRKLSTGSCDNYIAQQESRNLSSEIMPVASLDY"
gene complement(501695..503254)
/gene="PRD1"
/locus_tag="MA16_Dca013369"
mRNA complement(501695..503254)
/gene="PRD1"
/locus_tag="MA16_Dca013369"
/product="Protein PRD1"
CDS complement(501695..503254)
/gene="PRD1"
/locus_tag="MA16_Dca013369"
/codon_start=1
/product="Protein PRD1"
/protein_id="PKU63325.1"
/translation="MLYLSINQDIHLHSLLREQRELQHSGSMGLKFLDLPMFNRYIMQ
NEGKLFQSSYPKSFGDLVGKNGVIIVHGEQQKRLHAIVDVRSKRVAINLMINQLMGVS
SASEIKEMACKFSDFLDGCIYVPINLGGFTYHTAMKERKGIIAKFKNIIANGQQQGGS
IERSGVLGSLVEEENLNDNPIADFILNLQSGSEAQTQTFANNLISSNLLTLCFAYLGL
FPTDQMRSNVYLILDRAFGPSFGQPMRDVFFYLPVDLLDLLFFLGQKSSIDPQLALCQ
CASLLFLYVSSHLGEGFADDTPVLASLEQYILVNSNYLFCMTGDSLMLAQSVHLYGLH
RGFQRNAKMSYSPETEKTLLNLLAIDDLELFSFCIHPMALKWLFQQERIMTYLSNQIL
KFCRLSRANESQLIVYPYGSQTMKMQLISALVVSGDNYVAQLLVSLMIELQGDGGEDD
MICVLNTMTEILSLLFAGNITFSSLQPDWFTIGSLLLAFTHPNKFVDIYQSCKIFDPG
GLLMIITPISF"
gene 508039..512758
/gene="DRB6"
/locus_tag="MA16_Dca013370"
mRNA join(508039..508284,510618..510837,511704..512758)
/gene="DRB6"
/locus_tag="MA16_Dca013370"
/product="Double-stranded RNA-binding protein 6"
CDS join(508039..508284,510618..510837,511704..512758)
/gene="DRB6"
/locus_tag="MA16_Dca013370"
/codon_start=1
/product="Double-stranded RNA-binding protein 6"
/protein_id="PKU63326.1"
/db_xref="InterPro:IPR014720"
/translation="MYKNQLQELAQRSCFCLPSYTCIREGPDHAPRFKATVNFNGEIF
ESPSFCTTLRQAEHAAAEIALNALSSRGPSHSLAARILDETGVYKNLLQEVAQRVGAP
LPSYKTVRCGHGHHTSFTCAVELAEILFTGEPAKSKKQAEKNAAMAAWNSLKQLTRQE
VCSVTEPENNDELEQITVARALLNYRLKEKIAMENNPNAPPFPKRFLVHPDKKPPSLQ
TSSSASKILPMIRPRSTPRTRPSSPRATEDFCFQSHLSPLENQMAQQLKFHSAGAAPY
RSTYQHFRMSSAGMAAPVNIRTSVPVFSAPPLPPPPVYQHLPPVMNSPWRMAPPVHIR
PAVPVFEAPPALFSSQLQVTQIQVKEKHAVSPLHEIQFKEQFPSVSPHSAIQPKEQQP
SASKVSGTQAKFVPGRATVTAEEEKEEPSLLTAVQVKEETPAKVTVEPALMNSVLVNQ
EPVHVTSAQSKDITKTEASVEAPERAIVVSESSNSPAAKNDFPELEMLENLRTLKL"
gene complement(518243..530719)
/locus_tag="MA16_Dca013371"
mRNA complement(join(518243..518434,521586..521769,
530505..530719))
/locus_tag="MA16_Dca013371"
/product="CASP-like protein 2"
CDS complement(join(518243..518434,521586..521769,
530505..530719))
/locus_tag="MA16_Dca013371"
/codon_start=1
/product="CASP-like protein 2"
/protein_id="PKU63327.1"
/db_xref="InterPro:IPR006702"
/translation="MFSSRPSVHPVEAPPLTDVTENHPPRVRMKDIQGMPGTSGGLAL
RFFQFMFAAAALGVMVSANDFSSVTSFRLVVILRIANCNFSSFDRYLVAAAILQSLWS
LSLALLDVYALLVKRSLRNPLVNVLFAIGDGITSTLTFAAACASAGITVLIGNDLNIC
SQNHCTTFETATAMAFISWFAVSPSFLLNFWSLASR"
assembly_gap 554590..559451
/estimated_length=4862
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 587096..587195
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 611680..612297
/estimated_length=618
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 629405..629933
/estimated_length=529
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 687457..687556
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 691316..691415
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 695362..695461
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 699201..699300
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene complement(705315..707180)
/locus_tag="MA16_Dca013372"
mRNA complement(join(705315..705543,706110..706183,
706623..706991,707166..707180))
/locus_tag="MA16_Dca013372"
/product="3-dehydrosphinganine reductase"
CDS complement(join(705315..705543,706110..706183,
706623..706991,707166..707180))
/locus_tag="MA16_Dca013372"
/note="GO_function: GO:0016491 - oxidoreductase activity
[Evidence IEA];
GO_process: GO:0008152 - metabolic process [Evidence IEA]"
/codon_start=1
/product="3-dehydrosphinganine reductase"
/protein_id="PKU63328.1"
/db_xref="InterPro:IPR002198"
/translation="MYYTEDTPEGTRVSILAQNPKRLEEAREAVHLTTSEEINVFNID
VRDTKAMSQAVEETGPIDVLVCNQGVLLPLELEKQELKEIKFMVDVNMMGTFHLIKAA
LPAMKWRTEETGLPASIALMSSQAGQVSMVKQHTLQANFLFEALVRRCSTRRARERRP
ELTNIIAGSSKGMEADDVAKASKNGIKSGRFIIPCNFEGTIIAIATCGLSPQSSFITT
FIEVAIANFL"
gene complement(791808..792029)
/gene="RPL35AC"
/locus_tag="MA16_Dca013373"
mRNA complement(791808..792029)
/gene="RPL35AC"
/locus_tag="MA16_Dca013373"
/product="60S ribosomal protein L35a-3"
CDS complement(791808..792029)
/gene="RPL35AC"
/locus_tag="MA16_Dca013373"
/note="GO_component: GO:0005622 - intracellular [Evidence
IEA];
GO_component: GO:0005840 - ribosome [Evidence IEA];
GO_function: GO:0003735 - structural constituent of
ribosome [Evidence IEA];
GO_process: GO:0006412 - translation [Evidence IEA]"
/codon_start=1
/product="60S ribosomal protein L35a-3"
/protein_id="PKU63329.1"
/db_xref="InterPro:IPR001780"
/translation="MSTKEDMGWYTGKRMVYNYKSNMKKKVTHYHCILGKVTRSHENS
GIVRAKCNTNLPPRSMGHKVRVYMYPSNI"
assembly_gap 798442..798541
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 803581..807559
/estimated_length=3979
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 826755..826854
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 916604..917293
/estimated_length=690
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 936011..936771
/estimated_length=761
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene complement(950611..952476)
/gene="BURP12"
/locus_tag="MA16_Dca013374"
mRNA complement(950611..952476)
/gene="BURP12"
/locus_tag="MA16_Dca013374"
/product="BURP domain-containing protein 12"
CDS complement(950611..952476)
/gene="BURP12"
/locus_tag="MA16_Dca013374"
/codon_start=1
/product="BURP domain-containing protein 12"
/protein_id="PKU63330.1"
/db_xref="InterPro:IPR004873"
/translation="MDWFTLLLILISISLSAAATSPAPAKSSLNPFTEKAALLRYWNR
KIPNSSPYPAFLVSKLTPLSISNAAKFSTIAASDPFKLSSTLPTFCSAAALLCTAELT
PSLASHPGDSAFSTYDNSNFTNYGTEAGGRVSAFKNYFGNETPLSTFRRYGHSSGGHN
DTFAAYGPRGNIVGANFTSYGTSSAGSLDKFNSYSNSSNIPVLGFNNYATEGTGTQEK
FKHYSDDSNVGQQLFSGYGKRGEGATLDFNSYANKYSNIIESGFSNYGENGSVTDIFK
SYSENSNIPDNHFRSYGSGSLAGIEKFNTYREQSNIGDDSFASYHKDANYGSVEFTNY
GNESSGSDAFKGYGEGSTNGQITFKSYFEDNTTFKSYAKTGIDFKSYHNSSTAQIHTA
SKHPGLKQWVDPGKFFRESSLKKGTVMPMPDIHDRTPPRSFLPRSIAGNIPLSASAVS
EIFKFPPGTTMEKAVASTVADCERSPSRGETKRCATSAEDMIDFAVSVLGSDVEVRST
ANTNGSQGNILIGDVKGLNGGNVTQSVSCHQSLFPYLVYYCHSVPRVRVYEAEILAVD
SGEKINHGTAICHIDTSDWSPTHGAFVALGPGPGKIEVCHWIFEGDMTWTVRDRV"
gene complement(962114..963268)
/locus_tag="MA16_Dca013375"
mRNA complement(962114..963268)
/locus_tag="MA16_Dca013375"
/product="Retrovirus-related Pol polyprotein from
transposon TNT 1-94"
CDS complement(962114..963268)
/locus_tag="MA16_Dca013375"
/codon_start=1
/product="Retrovirus-related Pol polyprotein from
transposon TNT 1-94"
/protein_id="PKU63331.1"
/db_xref="InterPro:IPR013103"
/translation="MRQPPGFEDSNHPDAVCHLHKSLYGLKQAPRQWFQKLTTALQAR
GFRFSRSDPSLLIYTKLHIQIYLLIYVDDIIVTGNDQSQIQLLLCDLKSQFALKQLGQ
ICLFLGIQITRSHNGFFLIQGHYAQNLLLEAGLSSCKSAITPITPTSKHLTDNNKPFH
DTFLYRRLAGSLQYLSITRPDIAFATNQVCQNMQRPTDRNFQQLKRILRYVKGTISYG
LPIMTGDTTLRTYTDADWASDITDRKSVSGFCTFMGPNLISWSVKKHVTVAKSSTEAE
YRALSAANSEVLWLRRLAEKLQMPQTSPTTIHCDNISAIAIAKNSVFHARTKLIEIDF
QFIRQQIYTGNINIQHISSHEQIADILTKPFSSSRFEYLCSKLSIRPPNA"
gene complement(990731..997409)
/locus_tag="MA16_Dca013376"
mRNA complement(join(990731..990945,991539..991594,
997123..997409))
/locus_tag="MA16_Dca013376"
/product="hypothetical protein"
CDS complement(join(990731..990945,991539..991594,
997123..997409))
/locus_tag="MA16_Dca013376"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63332.1"
/translation="MLELKFSSMIGGFIALPSSLFQKSLLLSLGFILEWTLPLLLPLS
FGFLLVFAVPVAPGCFPVMLFHSLCWLLEFLAGWVSRGCLLGFPWSSFLCFLKFYKGI
TGSFQQINSDMKQAKICGWQKRRKLWKWRWNNLEPRCKRNIPDGGKIFWNEGKIFLHR
KPFWKHGQHDENIDRDANEDFTNYS"
gene complement(1002406..1002867)
/locus_tag="MA16_Dca013377"
mRNA complement(1002406..1002867)
/locus_tag="MA16_Dca013377"
/product="hypothetical protein"
CDS complement(1002406..1002867)
/locus_tag="MA16_Dca013377"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63333.1"
/translation="MATKKVEALGGELAQIKSGMEEKFSTMERMEGRLGGIEKIIKKL
MEMQSQASWAVPITSPHHNLTKGPMAKLKGKEIEREEFDEKSSFHQEPPLRTLIMGGI
EVSKGGTAEKCSMVEFMKEVVGDRPLWKAIWIRGVDNRRGRWKSRTMGIGS"
gene 1004506..1005967
/locus_tag="MA16_Dca013378"
mRNA join(1004506..1004653,1005885..1005967)
/locus_tag="MA16_Dca013378"
/product="hypothetical protein"
CDS join(1004506..1004653,1005885..1005967)
/locus_tag="MA16_Dca013378"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63334.1"
/translation="MTAYSSSLSYRDQFLASIAPPLLSSSIPRLTTSDQAARTCDTSV
KHDLQRVMPDHHSTKILSMSEGGSSAQSDEEE"
gene complement(1016051..1022603)
/locus_tag="MA16_Dca013379"
mRNA complement(join(1016051..1016179,1017820..1019645,
1019800..1019976,1020559..1020662,1022434..1022603))
/locus_tag="MA16_Dca013379"
/product="hypothetical protein"
CDS complement(join(1016051..1016179,1017820..1019645,
1019800..1019976,1020559..1020662,1022434..1022603))
/locus_tag="MA16_Dca013379"
/note="GO_function: GO:0005097 - Rab GTPase activator
activity [Evidence IEA];
GO_process: GO:0032313 - regulation of Rab GTPase activity
[Evidence IEA]"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63335.1"
/db_xref="InterPro:IPR000195"
/translation="MEIPLPDSFSIGRSSGGWSRFSSLRGVRWRFYLGILPSSPSVSI
DDLRRVTADARRSYASLRRRLLIDPHIPKDGNKSPDLSMDNPLSQNPESTWGRFFRNA
ELEKMLEQDLSRLYPEDDHYFQTLACQTMLRRILLVWCLRHPECGYRQGMHELLAPLV
YVLHVDLNYLSQVRGLYEDHFNEEFDGADCEVSSNTLMKAKSWDVGANADDFNQIKVP
NITSFDDLDRDIRDVLLLSDSYGAEGELGIVLSEKFMEHDAYCMFDGLMSGARGVVAI
TEFFCSRPSMGSSTGLPPIIEASSALYHLLSIVDSSLHCHLIELGVEPQYFALRWLRV
LFGREFSLSDLLVIWDELFSALNCSCTENDEYRFRILCSPRGAFISAMAVAMLQHVRS
SLLASENATSCLKRILNFPRNISVEKLIKKARFCQVLALETNMSVSSKAGLTKISSLA
VRTGSPTSKSPIQIMPDSYWEEKWKVLQKTPQNSDSVNAGQIKGLLGETLESLRTESF
TSPAKTVNMEKDAHSLDKRCLFFDDLSQIAESLDDVVQRIPFCDDSPSLEEDVKKCLS
EEPGYESSVRTSECMGEESLSTGNSSVFSMNTNTNSESNDPEIESEKSGVVSVFFSRE
NEDGNNLVKEECSNASYNPIPKEAEANADVAKSGPSVNVEVKGVSGKVRKTAAGKFQW
FWRIGKVSFNEKSMDKGAVAETLRSSNIGKESVCQEHPTISASAYSNCADSARAEVGD
MKTLGTLKILAQSMIENIQVIETVFQQEKVQAGKIFNGNEQAAAIEALKELRKISTIL
SEI"
assembly_gap 1027987..1028777
/estimated_length=791
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1038060..1038236
/estimated_length=177
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1066323..1067293
/estimated_length=971
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene 1108062..1134852
/gene="ARA12"
/locus_tag="MA16_Dca013380"
mRNA join(1108062..1108240,1108974..1109118,1109227..1109621,
1111865..1111960,1112050..1112122,1112571..1112856,
1131865..1132190,1132322..1132589,1133322..1133603,
1134446..1134852)
/gene="ARA12"
/locus_tag="MA16_Dca013380"
/product="Subtilisin-like protease"
CDS join(1108062..1108240,1108974..1109118,1109227..1109621,
1111865..1111960,1112050..1112122,1112571..1112856,
1131865..1132190,1132322..1132589,1133322..1133603,
1134446..1134852)
/gene="ARA12"
/locus_tag="MA16_Dca013380"
/note="GO_component: GO:0005618 - cell wall [Evidence
IEA];
GO_component: GO:0016020 - membrane [Evidence IEA];
GO_function: GO:0004252 - serine-type endopeptidase
activity [Evidence IEA];
GO_function: GO:0042802 - identical protein binding
[Evidence IEA];
GO_process: GO:0006508 - proteolysis [Evidence IEA];
GO_process: GO:0043086 - negative regulation of catalytic
activity [Evidence IEA]"
/codon_start=1
/product="Subtilisin-like protease"
/protein_id="PKU63336.1"
/db_xref="InterPro:IPR000209"
/db_xref="InterPro:IPR003137"
/db_xref="InterPro:IPR010259"
/db_xref="InterPro:IPR010435"
/db_xref="InterPro:IPR015500"
/translation="MLNKMDLCLFVFLLLPFVSFGSGDVYLITMEGEPVVSYMGGIDG
FSATAEDSMEEMDITSESVTSYSLYLKRKHDELLDLLFEAKSYKKIYSYCHLLNGFSV
HLTPEQATALSKAPGVKYVEKDGKVRKLTTHTPQFLGLPTGVWPTGGGFDKAGEDVVI
GLIDSGVFPKHPSFATYNTDPYGPLPRYRGKCEIDPETKRSFCNGKIIGAQHFAKAAI
AAGAFNPAVDFPSPLDGDGHGTHTAAIAAGNNGIPVRMHGHEFGKASGMAPRARIAIY
KVLYRLFGGYVSDVVAAIDQAVQDGVDVINLSVGPNSPPSTTKTTFLNPFDAALLSAV
KAGVFVAQAAGNGGPFPKTLVSFSPWITTVAAAVDDRRYKNHITLGNGRTLPGLGLSP
ATHANKSFDLVSVSDVLLDSSVMKYNPLDCQRPELLNKNLVEGKILLCGYSFNFVSGT
ASIRKVCETAKSLGAAGFVVAVESSYPGTKYDPVPVALPGILITDVSQTKELIDYYNS
STKRDWAGRPTGFQATASIADGLAPILHNSAPQVALFSSRGPDVKDFSFQDADVLKPD
ILAPGSLIWAAWAPNGTDEANYEGEGFAMVSGTSMATPHIAGIAALMKQKYPHWSPAA
IKSALMTTANTMDRAGRPLQAQQYSDTQMMTLSPATPFDYGSGEVDPKAALDPGLILD
ASYVDYINFLCSIPGVDPHEVSNITSSQCNATHGKPSDLNSPSITISHLVGTQTVKRT
VTNVAETETYVLSTRMSPEIALEANPPAMTILAGSSKEISVSLTVRSVTGTYSFGEIL
MKGNRGHLVRIPVVAMGYSS"
assembly_gap 1139621..1139658
/estimated_length=38
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1162922..1166749
/estimated_length=3828
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1171132..1171231
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene 1172999..1174027
/gene="HMGB4"
/locus_tag="MA16_Dca013381"
mRNA join(1172999..1173048,1173156..1173257,1173346..1173403,
1173498..1173542,1173624..1173701,1173786..1173872,
1174010..1174027)
/gene="HMGB4"
/locus_tag="MA16_Dca013381"
/product="High mobility group B protein 4"
CDS join(1172999..1173048,1173156..1173257,1173346..1173403,
1173498..1173542,1173624..1173701,1173786..1173872,
1174010..1174027)
/gene="HMGB4"
/locus_tag="MA16_Dca013381"
/codon_start=1
/product="High mobility group B protein 4"
/protein_id="PKU63337.1"
/db_xref="InterPro:IPR009071"
/translation="MKEVRPTSGNARKSDGRLAAKKAPEKRKTGSRKAKDPNKPKRPP
SAFFVFMDQFRKEFKEKNPENKLVSVVGKAGGNKWKSMSDAEKAPYVAKAGKLKDEYL
KKIRFYDGSDVEKKNAAEDESSDKSKSEVSEEGAESDGEEEDD"
assembly_gap 1196790..1196799
/estimated_length=10
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene 1232600..1239376
/gene="NAC098"
/locus_tag="MA16_Dca013382"
mRNA join(1232600..1232807,1234754..1235028,1238885..1239376)
/gene="NAC098"
/locus_tag="MA16_Dca013382"
/product="Protein CUP-SHAPED COTYLEDON 2"
CDS join(1232600..1232807,1234754..1235028,1238885..1239376)
/gene="NAC098"
/locus_tag="MA16_Dca013382"
/note="GO_function: GO:0003677 - DNA binding [Evidence
IEA];
GO_process: GO:0006355 - regulation of transcription,
DNA-dependent [Evidence IEA]"
/codon_start=1
/product="Protein CUP-SHAPED COTYLEDON 2"
/protein_id="PKU63338.1"
/db_xref="InterPro:IPR003441"
/translation="MQNQNNRKEGGEMDGAEAEEEKLPPGFRFHPTDEELITYYLTHK
ITKANFTARAIAEVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGMRTNRATNSG
YWKTTGKDKEIYDSRSSELAGMKKTLVFYKGRAPRGEKTNWVMHEYRLQPKSSFKGNL
MVDEWVVCRVILKSNSSSKKCSSTSQSHRLISPCSLNIIGPPILPTFFGSHNLAELLR
YPTGRPPSSLNFQTINTQFDHSTASFPQPPSSLGRLNLNLGGQQLLRAMNTPLNTTEG
VLLPQPFMGNIAECESGYGSGSNIVGAASRIQNLEESCMDLDGYWPTY"
assembly_gap 1244990..1251144
/estimated_length=6155
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
gene complement(1251160..1251369)
/locus_tag="MA16_Dca013383"
mRNA complement(1251160..1251369)
/locus_tag="MA16_Dca013383"
/product="hypothetical protein"
CDS complement(1251160..1251369)
/locus_tag="MA16_Dca013383"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63339.1"
/translation="MPPFPDTDRISRILAPYASLCAHGTRTDVLIAPEHNLSSDPELV
FRNRFQSSFQIFPDTDRISQDPDPL"
gene complement(1267479..1295474)
/locus_tag="MA16_Dca013384"
mRNA complement(join(1267479..1267588,1288220..1288418,
1288520..1288578,1288660..1288789,1295140..1295261,
1295414..1295474))
/locus_tag="MA16_Dca013384"
/product="hypothetical protein"
CDS complement(join(1267479..1267588,1288220..1288418,
1288520..1288578,1288660..1288789,1295140..1295261,
1295414..1295474))
/locus_tag="MA16_Dca013384"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63340.1"
/translation="MLGISYGELFLIIGATAALIGPKDLPFIAKAAGRLAGRAVGYVQ
MARGQFESVMQQSQVNQVHKELQDTMAQLEAIRYEIRGISVMNPIPFTRRLEGVEPPA
KNGAVFAEKSDTDHMSVLNNAKDLGSTETNSSSIHSQAMAYARLAKTTIIKFNSSQAS
LNNENLNGQDGLPSVLPISAEIAGLLSKRNDDVKGSDILHEAIVEAEVAKNAKQFFSQ
PENQIPKE"
gene complement(1314934..1317450)
/locus_tag="MA16_Dca013385"
mRNA complement(join(1314934..1316036,1316727..1317450))
/locus_tag="MA16_Dca013385"
/product="putative receptor-like protein kinase"
CDS complement(join(1314934..1316036,1316727..1317450))
/locus_tag="MA16_Dca013385"
/note="GO_function: GO:0004672 - protein kinase activity
[Evidence IEA];
GO_function: GO:0004713 - protein tyrosine kinase activity
[Evidence IEA];
GO_function: GO:0005524 - ATP binding [Evidence IEA];
GO_function: GO:0030247 - polysaccharide binding [Evidence
IEA];
GO_process: GO:0006468 - protein phosphorylation [Evidence
IEA]"
/codon_start=1
/product="putative receptor-like protein kinase"
/protein_id="PKU63341.1"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR001245"
/db_xref="InterPro:IPR002290"
/db_xref="InterPro:IPR020635"
/db_xref="InterPro:IPR025287"
/translation="MPWYHLLLLGIFPIAYALSNDCPSPMCGDMEIKFPFTLESSSNS
CRTAGASANLSCSSTNETIITLPSSESYRVTSIDYDNYYGIFIQVLLSSSSINCPWRK
GIRNLPNVNGSIFTVAVSGFVLLNCTTKLSWRTGYDNIVGPISCLSEPGSFVYALTKY
VRMGILPSSCIEIYTGEFLSDSFGQSIQVIASKSMQGETASLYPNVVDNFRACYSCSS
QGKKCGYNIRMDKKFCYSEDSHHGIAICTSLVIFLIVALVVLYYFKKYRNKKQKHIKV
EKFLATYKSTTLTRYNFADIKKMTKKFKHKLGQGGFGSVYKGELTNGIPVAVKLLEAS
KFNGDDFVNEVATIGKIHHVNVVRLLGFCSNGTNRALVYEFMPNNSLEKYIFLGQSEK
RHDFFTMEKLHEIAIGIAQGINYLHQGCNQRIVHFDIKPHNILLDYDFNPKISDFGLA
KLCSRDQSIVIISAARGTMGYIAPEVYSRNFGPVSHKSDVYSYGMLLLEMIGRRKNID
PTIENLSEIYFPEWIYNKLVHSNSLGLALEMEGNEEIMKRLAIIALWCIQWNPAERPS
MRKVVQMLTMIFQSLEMPPTPFVPSSDQSDNVYVSRNHKKKN"
gene complement(1339183..1355104)
/locus_tag="MA16_Dca013386"
mRNA complement(join(1339183..1339319,1339658..1339952,
1354226..1355104))
/locus_tag="MA16_Dca013386"
/product="hypothetical protein"
CDS complement(join(1339183..1339319,1339658..1339952,
1354226..1355104))
/locus_tag="MA16_Dca013386"
/codon_start=1
/product="hypothetical protein"
/protein_id="PKU63342.1"
/db_xref="InterPro:IPR021924"
/translation="MADGIAFSGCGDERESLLPRKSSYQRSFSHAADELKSFRSCLRW
LCIDHSDSFHAAISWFVFFIFSFAVPLASHFIMSYSPSRRAYDSVVQLALSGSAALSY
LSLSTFVRRHGLRRFLFLDKLRLESERVRLGYTNQLNRSFRILSVFVLPCFAGEVVYK
LAWYLSGEERVPPGLFFMGNAVLAESVFAFLELASWIYRTAIFFVVCVLFRLMCYLQI
LRLEDFAGAFSDGANVACILRAHLRIRRELRIISHRYRIFNVYCVVIVTVSQFVTLLV
TTRPSAVVNFFNAGEIALCSIGLVTGLLMCLRSAAKITHKAQAITSLAATWHVSATID
SYGEDSEVPSPETSVFVNEAGEEESEHQDSDEDDELEDAKLVSSNIHTFSFQKRQSLV
TYMENNRAGITLFGFVVDRTWLHALFMIEFSLVMWLLGKTVGIS"
gene 1400163..1448938
/locus_tag="MA16_Dca013387"
mRNA join(1400163..1400359,1400439..1400565,1405275..1405402,
1405492..1405561,1405676..1405778,1406636..1406753,
1416525..1416606,1428097..1428158,1431407..1431479,
1431574..1431657,1444147..1444227,1448735..1448938)
/locus_tag="MA16_Dca013387"
/product="tRNA-dihydrouridine synthase A"
CDS join(1400163..1400359,1400439..1400565,1405275..1405402,
1405492..1405561,1405676..1405778,1406636..1406753,
1416525..1416606,1428097..1428158,1431407..1431479,
1431574..1431657,1444147..1444227,1448735..1448938)
/locus_tag="MA16_Dca013387"
/note="GO_function: GO:0017150 - tRNA dihydrouridine
synthase activity [Evidence IEA];
GO_function: GO:0050660 - flavin adenine dinucleotide
binding [Evidence IEA];
GO_process: GO:0008033 - tRNA processing [Evidence IEA];
GO_process: GO:0055114 - oxidation-reduction process
[Evidence IEA]"
/codon_start=1
/product="tRNA-dihydrouridine synthase A"
/protein_id="PKU63343.1"
/db_xref="InterPro:IPR001269"
/translation="MKTAMHTLLCTLIPIYHGNAAAYRKSISMLHDASAQFKRVQSLK
RKLEINTETCLDGGKSHPPLFSVAPMMDWTDNHYRTLARLISRHAWLYTEMVVAETIV
HQKDNLDRFLAFSPDQHPIVLQIGGSNLENLAKAAELANLYSYDEINFNCGCPSGKVA
GHGCFGARLMFNPKLVGHAMSAIAANSDVPVSVKCRIGVDDRDSYNELCDFIYTVSSQ
SPTNHFVIHARKALLSGLSPAENRKVPPLKYEYYFALLRDFPELQFTLNGGITCINQV
DAAIRQGASGVMVGRAAYNNPWFTLGHVDVAIYGVPFHRCSRRQIIEQYQEYADSVIG
KFGSNKPNVRQLVKPLLNLFHSEPGNSRWKRAADAALRHCKTVRSFLEETLPNLPDEV
LDSTLVNSPCDHERFADVDAILPPPYRSSGEQLAYEEGEGTRQGSLLSCL"
assembly_gap 1411613..1413198
/estimated_length=1586
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1452005..1452104
/estimated_length=100
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1460537..1461829
/estimated_length=1293
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1473212..1473636
/estimated_length=425
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
assembly_gap 1487939..1494691
/estimated_length=6753
/gap_type="within scaffold"
/linkage_evidence="paired-ends"
CONTIG join(JSDN02024866.1:1..9108,gap(100),JSDN02024867.1:1..13131,
gap(114),JSDN02024868.1:1..7565,gap(11082),JSDN02024869.1:1..3699,
gap(473),JSDN02024870.1:1..16564,gap(572),JSDN02024871.1:1..72937,
gap(1424),JSDN02024872.1:1..104923,gap(10),JSDN02024873.1:1..72563,
gap(100),JSDN02024874.1:1..57728,gap(48),JSDN02024875.1:1..182448,
gap(4862),JSDN02024876.1:1..27644,gap(100),JSDN02024877.1:1..24484,
gap(618),JSDN02024878.1:1..17107,gap(529),JSDN02024879.1:1..57523,
gap(100),JSDN02024880.1:1..3759,gap(100),JSDN02024881.1:1..3946,
gap(100),JSDN02024882.1:1..3739,gap(100),JSDN02024883.1:1..99141,
gap(100),JSDN02024884.1:1..5039,gap(3979),JSDN02024885.1:1..19195,
gap(100),JSDN02024886.1:1..89749,gap(690),JSDN02024887.1:1..18717,
gap(761),JSDN02024888.1:1..91215,gap(791),JSDN02024889.1:1..9282,
gap(177),JSDN02024890.1:1..28086,gap(971),JSDN02024891.1:1..72327,
gap(38),JSDN02024892.1:1..23263,gap(3828),JSDN02024893.1:1..4382,
gap(100),JSDN02024894.1:1..25558,gap(10),JSDN02024895.1:1..48190,
gap(6155),JSDN02024896.1:1..160468,gap(1586),
JSDN02024897.1:1..38806,gap(100),JSDN02024898.1:1..8432,gap(1293),
JSDN02024899.1:1..11382,gap(425),JSDN02024900.1:1..14302,gap(6753),
JSDN02024901.1:1..3834)
//