LOCUS PKU63321.1 860 aa PRT CON 21-DEC-2017
DEFINITION Dendrobium catenatum 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase, chloroplastic protein.
ACCESSION KZ503501-17
PROTEIN_ID PKU63321.1
SOURCE Dendrobium catenatum
ORGANISM Dendrobium catenatum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae;
Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium.
REFERENCE 1 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Xu,Q., Bian,C., Tsai,W.C., Yeh,C.M., Liu,K.W.,
Yoshida,K., Zhang,L.S., Chang,S.B., Chen,F., Shi,Y., Su,Y.Y.,
Zhang,Y.Q., Chen,L.J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.W., Zhu,S.L., Zhao,X., Deng,C., Niu,S.C., Huang,J., Wang,M.,
Liu,G.H., Yang,H.J., Xiao,X.J., Hsiao,Y.Y., Wu,W.L., Chen,Y.Y.,
Mitsuda,N., Ohme-Takagi,M., Luo,Y.B., Van de Peer,Y. and Liu,Z.J.
TITLE The Dendrobium catenatum Lindl. genome sequence provides insights
into polysaccharide synthase, floral development and adaptive
evolution
JOURNAL Sci Rep 6, 19029 (2016)
PUBMED 26754549
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1498525)
AUTHORS Zhang,G.Q., Liu,K.W., Li,Z., Lohaus,R., Hsiao,Y.Y., Niu,S.C.,
Wang,J.Y., Lin,Y.C., Xu,Q., Chen,L.J., Yoshida,K., Fujiwara,S.,
Wang,Z.W., Zhang,Y.Q., Mitsuda,N., Wang,M., Liu,G.H., Pecoraro,L.,
Huang,H.X., Xiao,X.J., Lin,M., Wu,X.Y., Wu,W.L., Chen,Y.Y.,
Chang,S.B., Sakamoto,S., Ohme-Takagi,M., Yagi,M., Zeng,S.J.,
Shen,C.Y., Yeh,C.M., Luo,Y.B., Tsai,W.C., Van de Peer,Y. and
Liu,Z.J.
TITLE The Apostasia genome and the evolution of orchids
JOURNAL Nature 549 (7672), 379-383 (2017)
PUBMED 28902843
REFERENCE 3 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Liu,K.-W., Chen,F., Hsiao,Y.-Y., Yoshida,K.,
Su,Y.-Y., Zhang,Y.-Q., Chen,L.-J., Deng,H., Zhu,S.-L., Zhao,X.,
Deng,C., Niu,S.-C., Huang,J., Wang,M., Liu,G.-H., Yang,H.-J.,
Mitsuda,N., Yeh,C.-M., Tsai,W.-C., Zhang,L.-S., Wang,Z.-W.,
Luo,Y.-B., Bian,C. and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2014) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, and the Orchid Conservation and Research Center of
Shenzhen, No. 889 Wangtong Road, Shenzhen, Guangdong 518114, China
REFERENCE 4 (bases 1 to 1498525)
AUTHORS Zhang,G.-Q., Xu,Q., Bian,C., Tsai,W.-C., Yeh,C.-M., Liu,K.-W.,
Yoshida,K., Zhang,L.-S., Chang,S.-B., Chen,F., Shi,Y., Su,Y.-Y.,
Zhang,Y.-Q., Chen,L.-J., Yin,Y., Lin,M., Huang,H., Deng,H.,
Wang,Z.-W., Zhu,S.-L., Zhao,X., Deng,C., Niu,S.-C., Huang,J.,
Wang,M., Liu,G.-H., Yang,H.-J., Xiao,X.-J., Hsiao,Y.-Y., Wu,W.-L.,
Chen,Y.-Y., Mitsuda,N., Ohme-Takagi,M., Luo,Y.-B., Van De Peer,Y.
and Liu,Z.-J.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2017) Shenzhen Key Laboratory for Orchid
Conservation and Utilization, The National Orchid Conservation
Center of China, Wangtong Road, Shenzhen 518114, China
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 10-MAY-2014
Assembly Method :: platanus v. 1.2.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 202.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Dendrobium catenatum"
/mol_type="genomic DNA"
/submitter_seqid="fragScaff_scaffold_1680"
/specimen_voucher="NOCC:Z.J. Liu 4979"
/db_xref="taxon:906689"
/chromosome="Unknown"
/sex="hermaphrodite"
/tissue_type="The whole plant"
/dev_stage="Growing period"
/country="China: Yunan, Guangnan County"
/lat_lon="23.57 N 104.59 E"
/collection_date="2012-09-17"
/collected_by="Zhong-Jian Liu"
protein /gene="ISPG"
/locus_tag="MA16_Dca013365"
/note="GO_function: GO:0046429 -
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
activity [Evidence IEA]; GO_process: GO:0016114 -
terpenoid biosynthetic process [Evidence IEA]; GO_process:
GO:0055114 - oxidation-reduction process [Evidence IEA]"
/db_xref="InterPro:IPR004588"
intron_pos 74:1 (1/20)
intron_pos 127:0 (2/20)
intron_pos 162:2 (3/20)
intron_pos 196:1 (4/20)
intron_pos 222:0 (5/20)
intron_pos 262:0 (6/20)
intron_pos 339:0 (7/20)
intron_pos 395:0 (8/20)
intron_pos 434:0 (9/20)
intron_pos 459:0 (10/20)
intron_pos 485:0 (11/20)
intron_pos 505:0 (12/20)
intron_pos 526:0 (13/20)
intron_pos 617:0 (14/20)
intron_pos 665:1 (15/20)
intron_pos 712:2 (16/20)
intron_pos 738:2 (17/20)
intron_pos 783:1 (18/20)
intron_pos 793:0 (19/20)
intron_pos 828:0 (20/20)
BEGIN
1 MMVAGTISTC FPTLKGTEYG LSFAKTVDFA KIASDPNSKK SWHCKSKVFM IRNSSSGSET
61 VELQPASEGS PLLVPRQKYC ESVHKTVRRK TRTVMVGNVA LGSQHPIRIQ TMTTSDTKDV
121 AKTVEEVMRI ADKGADIVRI TVQGKREADA CFEIKNSLVQ NNYNIPLVAD IHFAPSVALR
181 VAECFDKIRV NPGNFADRRA QFVKLEYDEE DYQKELEHIE EVFSPLVDKC KKYGRAMRIG
241 TNHGSLSDRI MSYYGDSPRG MVESAFEFAR ICRKLDFHNF IFSMKASNPV IMVQAYRLLV
301 AEMYVQGWDY PLHLGVTEAG EGEDGRMKSA IGIGTLLQKR TATKGCGSSL QKAGGRWLVL
361 LEEEQQLSGG LVEKQKQSRT VGRRAIAFRK EEFADGLGDT IRVSLTEPPE EEIDPCRKLA
421 SLGMRAANIQ KGVAPFEEKN RRYFDFQRRS GQLPVQKEGD EVDYRGVLHR DGSVLMSVSL
481 DKLKTPELLY RSLAAKLVVG MPFKDLATVD SILLKEVPPV DDADAWKSID MLFSFSRVKE
541 GVQEDSGDNW RLFIFCGDFF HHFLHIRQPL EGEISPREQS KHRRQHFGAS WTAAAKSGAL
601 GQQSSSSIFC FLAFDKRLAL KRLIDISMGI LVPLSEQLTR PLQNAIVLVN LKELSTGAYK
661 LLPEGTRLAV TVRGDERYEE LDILMKVADI TMLLQCLPYS EEKVGRVHSS RRLFEYLQEN
721 SLNFPVIHHL QFPDGTERDD LVIGAGSEAG ALLVDGLGDG ILIEAQDHDF DFLRDTSFNL
781 LQVSSSSFQL QLIAIMGCIV NGPGEMADAD FGYVGGAPGK IDLYVGKTVV KRGIAMEGAT
841 EALIQLIKDH DRWVDPPAEE
//