LOCUS       CZR14605.1               915 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Nephrin protein.
ACCESSION   BX284606-3522
PROTEIN_ID  CZR14605.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="syg-2"
                     /locus_tag="CELE_C26G2.1"
                     /standard_name="C26G2.1g"
                     /note="Confirmed by transcript evidence"
                     /db_xref="GOA:A0A131MBZ2"
                     /db_xref="InterPro:IPR003598"
                     /db_xref="InterPro:IPR003599"
                     /db_xref="InterPro:IPR003961"
                     /db_xref="InterPro:IPR007110"
                     /db_xref="InterPro:IPR013098"
                     /db_xref="InterPro:IPR013162"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR036116"
                     /db_xref="InterPro:IPR036179"
                     /db_xref="UniProtKB/TrEMBL:A0A131MBZ2"
                     /db_xref="WormBase:WBGene00007750"
     intron_pos      27:1 (1/16)
     intron_pos      53:2 (2/16)
     intron_pos      81:0 (3/16)
     intron_pos      127:1 (4/16)
     intron_pos      172:0 (5/16)
     intron_pos      224:1 (6/16)
     intron_pos      285:2 (7/16)
     intron_pos      333:1 (8/16)
     intron_pos      429:0 (9/16)
     intron_pos      474:2 (10/16)
     intron_pos      580:0 (11/16)
     intron_pos      672:0 (12/16)
     intron_pos      762:1 (13/16)
     intron_pos      814:0 (14/16)
     intron_pos      841:1 (15/16)
     intron_pos      863:0 (16/16)
BEGIN
        1 MAEYECRANN SRTGNPKRKA MKLEVNYPPA SVELFGESNI RYGSSANIQC KSLPSNPASQ
       61 ITWIINGRSV PTPTQREFVV ENGIVSSSNV SVHSNELSVE AHQINVECMA TNPEGSSAKQ
      121 HVIKIIAPPK APIITGLEDR KFFEGDIVNV TCEAQGGNPL AELSWYRGSE KVNGAHNEVA
      181 GFSSYSTLAL RVDRTMNTQR LKCEATNAAL DEPLIESQYL SVYYPPRRVL IRPADSGDQR
      241 LLVGKSARLV CGTLSSNPAA HISWQFSRAT DDNKVHLGDV SLNETTRDNG FNVENVLSFT
      301 PTEEYDGTVV HCIANHPEWK HSVNTSFPLN VMYPPKMLVN DPVTVVMSEG DSFKENLTVR
      361 GNPAISLWQW RKNGVPFDHT IGRVFARGAV LSGKQLLSTD AGVYTLTATN SVGSTNITIK
      421 LAVEYSARIT SISTPVIAAT GDTVLLECEA DGEPSKANMI HWYKNGEILA AQHRGHKKAI
      481 LRLNATEQQS GEYTCKADNG IGVPAEGQTF LLVNSAPRVL PVARYAKTAG ILGGVAKARC
      541 KVYAVPTVEF VWEKDEQLIK KNSSKYSIVN TQIDYSTYES TLWIKNIVPD DYTKKVKCIA
      601 RNSFGTDHLS IPIIPPTHPD EPFNLTMTNS TLNTISVAWE PRFDGGSDQI FEVKYRRQND
      661 DLIHLVNTTH TNLRLSGLAT ANTYFFQIRS INARGFASSW TSPVIFATLN EDGVNVAMIR
      721 NEKLKLTTWI PYILIFIVLF MLLNVVICCF VCNRTKKRKL REKTEMARTA INGGDVRQVQ
      781 MYGTMMGNDG MSRRDIDDRP EMSEDEHSVR TMIEVSPNGY MQPIEPMLYE STGLLEYDYQ
      841 TRSYMGSSQG TRSMTYANVP YPEPPQPSYH SNWNSLQRQS NNNTSPQHHL STFINPNMGV
      901 RAGPINYAQL DGDLV
//