LOCUS CZR14605.1 915 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Nephrin protein. ACCESSION BX284606-3522 PROTEIN_ID CZR14605.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="syg-2" /locus_tag="CELE_C26G2.1" /standard_name="C26G2.1g" /note="Confirmed by transcript evidence" /db_xref="GOA:A0A131MBZ2" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013162" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036116" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/TrEMBL:A0A131MBZ2" /db_xref="WormBase:WBGene00007750" intron_pos 27:1 (1/16) intron_pos 53:2 (2/16) intron_pos 81:0 (3/16) intron_pos 127:1 (4/16) intron_pos 172:0 (5/16) intron_pos 224:1 (6/16) intron_pos 285:2 (7/16) intron_pos 333:1 (8/16) intron_pos 429:0 (9/16) intron_pos 474:2 (10/16) intron_pos 580:0 (11/16) intron_pos 672:0 (12/16) intron_pos 762:1 (13/16) intron_pos 814:0 (14/16) intron_pos 841:1 (15/16) intron_pos 863:0 (16/16) BEGIN 1 MAEYECRANN SRTGNPKRKA MKLEVNYPPA SVELFGESNI RYGSSANIQC KSLPSNPASQ 61 ITWIINGRSV PTPTQREFVV ENGIVSSSNV SVHSNELSVE AHQINVECMA TNPEGSSAKQ 121 HVIKIIAPPK APIITGLEDR KFFEGDIVNV TCEAQGGNPL AELSWYRGSE KVNGAHNEVA 181 GFSSYSTLAL RVDRTMNTQR LKCEATNAAL DEPLIESQYL SVYYPPRRVL IRPADSGDQR 241 LLVGKSARLV CGTLSSNPAA HISWQFSRAT DDNKVHLGDV SLNETTRDNG FNVENVLSFT 301 PTEEYDGTVV HCIANHPEWK HSVNTSFPLN VMYPPKMLVN DPVTVVMSEG DSFKENLTVR 361 GNPAISLWQW RKNGVPFDHT IGRVFARGAV LSGKQLLSTD AGVYTLTATN SVGSTNITIK 421 LAVEYSARIT SISTPVIAAT GDTVLLECEA DGEPSKANMI HWYKNGEILA AQHRGHKKAI 481 LRLNATEQQS GEYTCKADNG IGVPAEGQTF LLVNSAPRVL PVARYAKTAG ILGGVAKARC 541 KVYAVPTVEF VWEKDEQLIK KNSSKYSIVN TQIDYSTYES TLWIKNIVPD DYTKKVKCIA 601 RNSFGTDHLS IPIIPPTHPD EPFNLTMTNS TLNTISVAWE PRFDGGSDQI FEVKYRRQND 661 DLIHLVNTTH TNLRLSGLAT ANTYFFQIRS INARGFASSW TSPVIFATLN EDGVNVAMIR 721 NEKLKLTTWI PYILIFIVLF MLLNVVICCF VCNRTKKRKL REKTEMARTA INGGDVRQVQ 781 MYGTMMGNDG MSRRDIDDRP EMSEDEHSVR TMIEVSPNGY MQPIEPMLYE STGLLEYDYQ 841 TRSYMGSSQG TRSMTYANVP YPEPPQPSYH SNWNSLQRQS NNNTSPQHHL STFINPNMGV 901 RAGPINYAQL DGDLV //