LOCUS CTQ87085.1 1222 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans SAP domain-containing protein protein.
ACCESSION BX284606-1157
PROTEIN_ID CTQ87085.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pqn-62"
/locus_tag="CELE_T03G11.1"
/standard_name="T03G11.1b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004145"
/db_xref="EnsemblGenomes-Tr:T03G11.1b"
/db_xref="EnsemblGenomes-Tr:T03G11.1c"
/db_xref="EnsemblGenomes-Tr:T03G11.1d"
/db_xref="InterPro:IPR003034"
/db_xref="InterPro:IPR036361"
/db_xref="UniProtKB/TrEMBL:A0A0K3AYL9"
/db_xref="WormBase:WBGene00004145"
intron_pos 209:0 (1/15)
intron_pos 316:0 (2/15)
intron_pos 351:1 (3/15)
intron_pos 407:2 (4/15)
intron_pos 466:0 (5/15)
intron_pos 506:2 (6/15)
intron_pos 553:0 (7/15)
intron_pos 623:1 (8/15)
intron_pos 673:2 (9/15)
intron_pos 728:2 (10/15)
intron_pos 813:0 (11/15)
intron_pos 848:0 (12/15)
intron_pos 894:0 (13/15)
intron_pos 1148:1 (14/15)
intron_pos 1182:0 (15/15)
BEGIN
1 MTQESMMSLQ QNPMQQHHHQ SNQMVSYNLV SEDSSVRLPP LTLNDRSYSI SSTVHLSNGL
61 QCQLQQNELT DNTHQSSQVN QCDYNQNMSE QSEQPILRPS RMESTNQSHQ NIDSMYHIDQ
121 PQQVVFQANL QNRSNRVMQQ TPNNSSNHQN HLSLKQPHLS MNSTQLQSGF QTGNRMMPSF
181 QVNPTTQDQV PHLSHMDQPP PTQHSMNSIS QSQQHPSQLS QLSCNSNQMS VQNHVLSPSS
241 TNSNMSLNMR SNSISSSSSS PIKNSILPST SPCTIPMNAN STTQLLMALN NNSPITSEQL
301 QEIQNMTTIS ADGTEILLMQ EPRLKQYPSI AEMCTTDLRS ACKKRSLPHT GPKPRLCERL
361 RGHENEVLEE RNRQNMKEYT DRHQMYEAQA ATLKAYQAKK ALLQVQSSPD MGTSNVYGAR
421 SNSSQCISSN ENSMSSTSVE GPPAKKKRIS KPKKALQSRL EKQTTITVAP QNSLTIPADS
481 CNQGSTTTNA IRTLVNNTNL MGGSNTQNGN TMVNGQSSQN SSSNFFGDMN QTGTGFFMKD
541 NSCFSHLGSG CRLISASSND DSQNTFGGTG RAFQAAVPPP PENSQLQFQN FGMTETIPQQ
601 SNEHVSQQQQ QIAQSRPMNL NQQQVIETPV NQSISNIFNI STANTMQQQQ QQNVQQQPQQ
661 QPNFINSSMA QNGLQASPCV ADQAGPSPSM PVSDPIATTS GSPVVVSAVA ESTSESAELM
721 DLETMQNLLS PATLRAREDL LTQQQAKINE LVKLIQKNHD TLREQQQQIN LAKKQQKQRQ
781 RQNVPSAPLD KHVNSRCIQH AIKSRQNFQM INELTTQQDS IRTAETRLIE QLHINTATDD
841 IARLIKQDGR TALVIVSLLH DYRTTREQNN RAKSTTGEQP VVADSTAVEV TKKKAPARKR
901 NANGTTKTAP SKKTAQQKQA VDNDVIQIIS STNEQKIPVE QSQQQNQQQN SQKQFLEFHH
961 PHVPQRVSSQ SDVDMEAIFK TVIDASRSQQ KESQTKQQQQ PQQQQYDNEV ISLPSEVSSP
1021 MRTQSQNSVQ SVFSDGSYSR NMAFQQENSP QEITYSMSNG AESNTSQQNE SPLQNSQHSE
1081 VVSKQSDIVE ILPQFDQNVM NHDVNQFHSN MIYNEDSNQE FIAQNSQTHD LDFDFPDIDQ
1141 MVANIRDSDP LSCPLDDIDL TAILNSWTET SDPKQQHTSA DMNMCDDLVY DGSQMINQDM
1201 NWNDYDPQSN IINQAFEQSQ IN
//