LOCUS CTQ87085.1 1222 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans SAP domain-containing protein protein. ACCESSION BX284606-1157 PROTEIN_ID CTQ87085.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pqn-62" /locus_tag="CELE_T03G11.1" /standard_name="T03G11.1b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00004145" /db_xref="EnsemblGenomes-Tr:T03G11.1b" /db_xref="EnsemblGenomes-Tr:T03G11.1c" /db_xref="EnsemblGenomes-Tr:T03G11.1d" /db_xref="InterPro:IPR003034" /db_xref="InterPro:IPR036361" /db_xref="UniProtKB/TrEMBL:A0A0K3AYL9" /db_xref="WormBase:WBGene00004145" intron_pos 209:0 (1/15) intron_pos 316:0 (2/15) intron_pos 351:1 (3/15) intron_pos 407:2 (4/15) intron_pos 466:0 (5/15) intron_pos 506:2 (6/15) intron_pos 553:0 (7/15) intron_pos 623:1 (8/15) intron_pos 673:2 (9/15) intron_pos 728:2 (10/15) intron_pos 813:0 (11/15) intron_pos 848:0 (12/15) intron_pos 894:0 (13/15) intron_pos 1148:1 (14/15) intron_pos 1182:0 (15/15) BEGIN 1 MTQESMMSLQ QNPMQQHHHQ SNQMVSYNLV SEDSSVRLPP LTLNDRSYSI SSTVHLSNGL 61 QCQLQQNELT DNTHQSSQVN QCDYNQNMSE QSEQPILRPS RMESTNQSHQ NIDSMYHIDQ 121 PQQVVFQANL QNRSNRVMQQ TPNNSSNHQN HLSLKQPHLS MNSTQLQSGF QTGNRMMPSF 181 QVNPTTQDQV PHLSHMDQPP PTQHSMNSIS QSQQHPSQLS QLSCNSNQMS VQNHVLSPSS 241 TNSNMSLNMR SNSISSSSSS PIKNSILPST SPCTIPMNAN STTQLLMALN NNSPITSEQL 301 QEIQNMTTIS ADGTEILLMQ EPRLKQYPSI AEMCTTDLRS ACKKRSLPHT GPKPRLCERL 361 RGHENEVLEE RNRQNMKEYT DRHQMYEAQA ATLKAYQAKK ALLQVQSSPD MGTSNVYGAR 421 SNSSQCISSN ENSMSSTSVE GPPAKKKRIS KPKKALQSRL EKQTTITVAP QNSLTIPADS 481 CNQGSTTTNA IRTLVNNTNL MGGSNTQNGN TMVNGQSSQN SSSNFFGDMN QTGTGFFMKD 541 NSCFSHLGSG CRLISASSND DSQNTFGGTG RAFQAAVPPP PENSQLQFQN FGMTETIPQQ 601 SNEHVSQQQQ QIAQSRPMNL NQQQVIETPV NQSISNIFNI STANTMQQQQ QQNVQQQPQQ 661 QPNFINSSMA QNGLQASPCV ADQAGPSPSM PVSDPIATTS GSPVVVSAVA ESTSESAELM 721 DLETMQNLLS PATLRAREDL LTQQQAKINE LVKLIQKNHD TLREQQQQIN LAKKQQKQRQ 781 RQNVPSAPLD KHVNSRCIQH AIKSRQNFQM INELTTQQDS IRTAETRLIE QLHINTATDD 841 IARLIKQDGR TALVIVSLLH DYRTTREQNN RAKSTTGEQP VVADSTAVEV TKKKAPARKR 901 NANGTTKTAP SKKTAQQKQA VDNDVIQIIS STNEQKIPVE QSQQQNQQQN SQKQFLEFHH 961 PHVPQRVSSQ SDVDMEAIFK TVIDASRSQQ KESQTKQQQQ PQQQQYDNEV ISLPSEVSSP 1021 MRTQSQNSVQ SVFSDGSYSR NMAFQQENSP QEITYSMSNG AESNTSQQNE SPLQNSQHSE 1081 VVSKQSDIVE ILPQFDQNVM NHDVNQFHSN MIYNEDSNQE FIAQNSQTHD LDFDFPDIDQ 1141 MVANIRDSDP LSCPLDDIDL TAILNSWTET SDPKQQHTSA DMNMCDDLVY DGSQMINQDM 1201 NWNDYDPQSN IINQAFEQSQ IN //