LOCUS CCO25888.1 1137 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ras GTPase-activating protein gap-2 protein.
ACCESSION BX284606-2216
PROTEIN_ID CCO25888.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="gap-2"
/locus_tag="CELE_ZK899.8"
/standard_name="ZK899.8d"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001516"
/db_xref="EnsemblGenomes-Tr:ZK899.8c"
/db_xref="EnsemblGenomes-Tr:ZK899.8d"
/db_xref="GOA:Q8MLZ5"
/db_xref="InterPro:IPR000008"
/db_xref="InterPro:IPR001849"
/db_xref="InterPro:IPR001936"
/db_xref="InterPro:IPR008936"
/db_xref="InterPro:IPR023152"
/db_xref="InterPro:IPR035892"
/db_xref="InterPro:IPR039360"
/db_xref="UniProtKB/Swiss-Prot:Q8MLZ5"
/db_xref="WormBase:WBGene00001516"
intron_pos 85:1 (1/16)
intron_pos 159:0 (2/16)
intron_pos 179:0 (3/16)
intron_pos 209:2 (4/16)
intron_pos 267:1 (5/16)
intron_pos 307:2 (6/16)
intron_pos 374:2 (7/16)
intron_pos 419:2 (8/16)
intron_pos 495:0 (9/16)
intron_pos 609:2 (10/16)
intron_pos 722:2 (11/16)
intron_pos 809:2 (12/16)
intron_pos 934:2 (13/16)
intron_pos 999:0 (14/16)
intron_pos 1055:2 (15/16)
intron_pos 1108:0 (16/16)
BEGIN
1 MHTPSPIPQE YQPQANYSSR HVHFAQSQSR RPFQRDQRNE NASIRKRLSR SCDHLSDHNF
61 SPRLPPIRRK PTKHVPSTLS LVIHDAIHDE TNSGGAQVGG ESLDRRGWSG ASTGNRTTLT
121 ASVHNNLMNG RMSSSSHNLS TRLSGSTQNL NQPTNAYGFP IVPPANNPSD SSASGRIANL
181 LSRPFRSNPL KRTKSVSKME KSLAEANQHS LHRVDASNTP SRDSSLYAQP PARRHLSQPA
241 REGSLRACRS HESLLSSAHS THMIELNEDN RLHPVHPSIF EVPNCFRLAS TYYSCRTPLE
301 RAKWMENLRK TMNPRRDQQR RTENSMLIWI LEAKGLPAKR KYYCEMTLDK TLYAKTSSKA
361 RTDNVFWGEN FEFMMLPKID EVCVSLFRES DSKKKKDTLI GYVTIGIDQL SSRSPVERWY
421 TVNTSHSDSG TSRIASALGG KSSSQESPSL RIKARWQSVH ILPLRAYDNL LETLCYNYLP
481 LCEQLEPVLN VRDKEDLATS LVRVMYKHNL AKEFLCDLIM KEVEKLDNDH LMFRGNTLAT
541 KAMESFMKLV ADDYLDSTLS DFIKTVLQCE DSCEVDPQKL GNVSNSSLEK NRALLMRYVE
601 VAWTKILNNV HQLPKNLRDV FSALRCRLEA QNREALADTL ISSSIFLRFL CPAILSPSLF
661 NLVSEYPSPT NARNLTLIAK TLQNLANFSK FGGKEPHMEF MNEFVDREWH RMKDFLLRIS
721 SESKSGPEKN ADAIVDAGKE LSLIATYLEE AWTPLLQEKN GNKHPLSNVK SVLSELAECK
781 RRSDNGVFHS PMVQQPSSDY ENSPQQHVVP RHENVPAYRS TPPTGQATVL GRSTNRPATH
841 LLTSDDYVLS SAFQTPSLRP GGTRLSDETG TSSSRTSDKT TSSAEIRDDT DSDFELREDR
901 GRGGRNRKRL PRTDASPSSS QQASSGYLSN NPSRSSYSNS SSSSPVERMA ALSIANPVFG
961 PGPSSGYAIP AEPKEIVYQK RASPPPYDPD VHNYHYQPMQ VYAVPPDCQV SPRTQATGGV
1021 NAQNRLSLPR TNPRASRNST LLRPSVVNVP DDWDRTSDYW RDRGENNYRS QLESQVESQA
1081 REIERLMREN IELKSKMMSS TKTVDSKRSD SGASEDSYDS LSSLDRPSRQ SLVVVPN
//