LOCUS CCO25888.1 1137 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Ras GTPase-activating protein gap-2 protein. ACCESSION BX284606-2216 PROTEIN_ID CCO25888.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="gap-2" /locus_tag="CELE_ZK899.8" /standard_name="ZK899.8d" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00001516" /db_xref="EnsemblGenomes-Tr:ZK899.8c" /db_xref="EnsemblGenomes-Tr:ZK899.8d" /db_xref="GOA:Q8MLZ5" /db_xref="InterPro:IPR000008" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR001936" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR023152" /db_xref="InterPro:IPR035892" /db_xref="InterPro:IPR039360" /db_xref="UniProtKB/Swiss-Prot:Q8MLZ5" /db_xref="WormBase:WBGene00001516" intron_pos 85:1 (1/16) intron_pos 159:0 (2/16) intron_pos 179:0 (3/16) intron_pos 209:2 (4/16) intron_pos 267:1 (5/16) intron_pos 307:2 (6/16) intron_pos 374:2 (7/16) intron_pos 419:2 (8/16) intron_pos 495:0 (9/16) intron_pos 609:2 (10/16) intron_pos 722:2 (11/16) intron_pos 809:2 (12/16) intron_pos 934:2 (13/16) intron_pos 999:0 (14/16) intron_pos 1055:2 (15/16) intron_pos 1108:0 (16/16) BEGIN 1 MHTPSPIPQE YQPQANYSSR HVHFAQSQSR RPFQRDQRNE NASIRKRLSR SCDHLSDHNF 61 SPRLPPIRRK PTKHVPSTLS LVIHDAIHDE TNSGGAQVGG ESLDRRGWSG ASTGNRTTLT 121 ASVHNNLMNG RMSSSSHNLS TRLSGSTQNL NQPTNAYGFP IVPPANNPSD SSASGRIANL 181 LSRPFRSNPL KRTKSVSKME KSLAEANQHS LHRVDASNTP SRDSSLYAQP PARRHLSQPA 241 REGSLRACRS HESLLSSAHS THMIELNEDN RLHPVHPSIF EVPNCFRLAS TYYSCRTPLE 301 RAKWMENLRK TMNPRRDQQR RTENSMLIWI LEAKGLPAKR KYYCEMTLDK TLYAKTSSKA 361 RTDNVFWGEN FEFMMLPKID EVCVSLFRES DSKKKKDTLI GYVTIGIDQL SSRSPVERWY 421 TVNTSHSDSG TSRIASALGG KSSSQESPSL RIKARWQSVH ILPLRAYDNL LETLCYNYLP 481 LCEQLEPVLN VRDKEDLATS LVRVMYKHNL AKEFLCDLIM KEVEKLDNDH LMFRGNTLAT 541 KAMESFMKLV ADDYLDSTLS DFIKTVLQCE DSCEVDPQKL GNVSNSSLEK NRALLMRYVE 601 VAWTKILNNV HQLPKNLRDV FSALRCRLEA QNREALADTL ISSSIFLRFL CPAILSPSLF 661 NLVSEYPSPT NARNLTLIAK TLQNLANFSK FGGKEPHMEF MNEFVDREWH RMKDFLLRIS 721 SESKSGPEKN ADAIVDAGKE LSLIATYLEE AWTPLLQEKN GNKHPLSNVK SVLSELAECK 781 RRSDNGVFHS PMVQQPSSDY ENSPQQHVVP RHENVPAYRS TPPTGQATVL GRSTNRPATH 841 LLTSDDYVLS SAFQTPSLRP GGTRLSDETG TSSSRTSDKT TSSAEIRDDT DSDFELREDR 901 GRGGRNRKRL PRTDASPSSS QQASSGYLSN NPSRSSYSNS SSSSPVERMA ALSIANPVFG 961 PGPSSGYAIP AEPKEIVYQK RASPPPYDPD VHNYHYQPMQ VYAVPPDCQV SPRTQATGGV 1021 NAQNRLSLPR TNPRASRNST LLRPSVVNVP DDWDRTSDYW RDRGENNYRS QLESQVESQA 1081 REIERLMREN IELKSKMMSS TKTVDSKRSD SGASEDSYDS LSSLDRPSRQ SLVVVPN //