LOCUS CCO25855.1 1659 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Alpha-2-macroglobulin domain-containing
protein protein.
ACCESSION BX284606-2659
PROTEIN_ID CCO25855.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F13D2.1"
/locus_tag="CELE_F13D2.1"
/standard_name="F13D2.1b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00008735"
/db_xref="EnsemblGenomes-Tr:F13D2.1b"
/db_xref="GOA:K8F7Z5"
/db_xref="InterPro:IPR001599"
/db_xref="InterPro:IPR011626"
/db_xref="InterPro:IPR041555"
/db_xref="UniProtKB/TrEMBL:K8F7Z5"
/db_xref="WormBase:WBGene00008735"
intron_pos 41:0 (1/36)
intron_pos 63:1 (2/36)
intron_pos 85:0 (3/36)
intron_pos 119:1 (4/36)
intron_pos 143:0 (5/36)
intron_pos 210:1 (6/36)
intron_pos 236:2 (7/36)
intron_pos 272:0 (8/36)
intron_pos 296:0 (9/36)
intron_pos 342:0 (10/36)
intron_pos 400:0 (11/36)
intron_pos 459:0 (12/36)
intron_pos 515:0 (13/36)
intron_pos 570:0 (14/36)
intron_pos 607:1 (15/36)
intron_pos 649:1 (16/36)
intron_pos 696:2 (17/36)
intron_pos 726:2 (18/36)
intron_pos 776:0 (19/36)
intron_pos 866:2 (20/36)
intron_pos 886:0 (21/36)
intron_pos 925:1 (22/36)
intron_pos 962:1 (23/36)
intron_pos 1021:1 (24/36)
intron_pos 1055:2 (25/36)
intron_pos 1135:0 (26/36)
intron_pos 1184:1 (27/36)
intron_pos 1216:0 (28/36)
intron_pos 1289:0 (29/36)
intron_pos 1312:0 (30/36)
intron_pos 1375:2 (31/36)
intron_pos 1405:0 (32/36)
intron_pos 1465:1 (33/36)
intron_pos 1514:1 (34/36)
intron_pos 1589:1 (35/36)
intron_pos 1629:2 (36/36)
BEGIN
1 MRLSTFLIIA FITCKVTTSP VIVLPPFFKL HGQNVITIVN EKSVKTVVQI DHGGEKTNKE
61 IQGEHQIISF HTSSSQSFAH IVIKVDGEVE LDQNVPVRPD LFNVHIHIDK AVYRKSELVN
121 VRILPLTHSG SIYRGDLSIT LVNGKGFVES STMRVKRVEE TDSMISDQLE IPSHTFFGDW
181 FLKVQPVEYG SKKIDEMLVF EKTFQVQDYD LPNYRLNGFL VDNSDLDKTT VTVEAKYFHG
241 KPVNGSVHVY CREVGSSSQD RSHLTHLRSG EFDNGIWSSI VDLGKCDPPN PLPKEIYIES
301 RENGTGYRQD LILGLDVMAP KFTITAVRPY FTNDVEEIIL LVDGDGIAHG NVSIRIECIS
361 EKNDVMRTKE VKVGSKIGDA LKIGIPKEWQ NDVSVIRVIA NRRIKNGFSN DTMLYIPNLS
421 NTSLVSSLIS PEEIKPFYKD DEIMNVHVKN TRKETNFVII CNSHTVHRVP NEVKNRILRV
481 KITDKMEGTC ILTAFTADSS VSDVMLFRVQ THCEDCKVKV SKVLNGMSKE LGNNDAIEPG
541 DVMELEFTGH SEAIVFYRAM DERLNYITLR NDYMIHEYLD YLIFGKQSQG AKILNLVNAE
601 KVEHAMKKMC TSAGHQLRFR CLQGQRSTSL VSEKCLKHVL KSCYKNSSAT AMQIVTPYLS
661 GKTTPVLSAS STNWLDNINV FRSKSMKAPL QLFVKPEFHD PGVVSQKSRI RQHFPETWLF
721 DAIVLERNGT KKITATSPDN VGQWALNNAY WWHGRVSLYP GQTKYIQTSK AIFLEVDMPR
781 NVYVNETISP LLTITGVDLV KSRETLVICL SELPRKVCAD QGANGKKGDT YYMKVEVSRS
841 SPIQSKYLMM KFLSPGVVNM TLTLKTENCQ TGKILDAVRK QIEIQKRADT EEYYERHILN
901 PSKPLVTAMN DDPGSTSSRN TKMITFSDQH GSMDEADTIN TLITSNVPDT ETVFSFSITL
961 SKFLPITDKI GKIPIGTRSK RNGQRILTSV IKELSIVLYK FKKLKLYGST SYQMEAEIND
1021 LINEMMQFSN CTSQKEPCAY SEFGKPQASN EASILLTSIA TSLLCEADVE ENRILGSLKT
1081 ITAYIPKLGR KDFNEDLSDI IDVENTEDKK YLLVSFMYQV SRDCSSYRSG LRDMTKSFGK
1141 LHKYFYELDE SAVQDRRTSA AIAFMATNAT AELMRSDLIA EINKEHPPYW KCNGYDTNRV
1201 DKLKRSSESF RRRRESCQVM VNSFALAAIV TAYAEGTEVD WDRLADWISE QQSSDGSYGS
1261 PLTTLVASRS LFEKSRRSVE IAYNDLLEVT VRCKGCSEKR INVTESAIEI HIPNNIHYVT
1321 LITKGHGKAV VAARIVATKR PRPKRGLTQD DYYPVHLSID QKVQDNFVHQ TVCFNVSNPT
1381 IKTLDIFHGT YTLFTATPDQ LYFLNDSYTP INPSSSALGL HFIITNIVSN QTLCYKVALS
1441 ESRGGKNIPY KSAPVPIRAT HPVQGLVGML LIAHPDVPRS DVLVRRRRHH HTRTRFVRRI
1501 IDESAVDTIC YDGGECSCAE TTCSVKCNKC HQDSPENLQQ LLSTNGIFGI RFELVSISNS
1561 LMNGANYTIY DGTVKDSNGL GAAAFELSKK VRVWLRSCNV GCTPGEKTLK RDYYVLGHED
1621 GLNSDSYGRQ NYILNHMDRF EESSYDCQNL NSAITIRYR
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